4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/makeDb/hgLoadCdsEvidence/hgLoadCdsEvidence.c src/hg/makeDb/hgLoadCdsEvidence/hgLoadCdsEvidence.c
index eaad51e..1950db1 100644
--- src/hg/makeDb/hgLoadCdsEvidence/hgLoadCdsEvidence.c
+++ src/hg/makeDb/hgLoadCdsEvidence/hgLoadCdsEvidence.c
@@ -1,78 +1,78 @@
 /* hgLoadCdsEvidence - Load table with cdsEvidence.. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "jksql.h"
 #include "dystring.h"
 
 boolean oldTable = FALSE;	/* Don't redo table. */
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "hgLoadCdsEvidence - Load table with cdsEvidence from file.\n"
   "usage:\n"
   "   hgLoadCdsEvidence database table file\n"
   "options:\n"
   "   -oldTable add to existing table\n"
   );
 }
 
 static struct optionSpec options[] = {
    {"oldTable", OPTION_BOOLEAN},
    {NULL, 0},
 };
 
 char *createSql = 
 "# cdsEvidence.sql was originally generated by the autoSql program, which also \n"
 "# generated cdsEvidence.c and cdsEvidence.h.  This creates the database representation of\n"
 "# an object which can be loaded and saved from RAM in a fairly \n"
 "# automatic way.\n"
 "\n"
 "#Evidence for CDS boundary within a transcript\n"
 "CREATE TABLE %s (\n"
 "    name varchar(255) not null,	# Name of transcript\n"
 "    start int not null,	# CDS start within transcript, zero based\n"
 "    end int not null,	# CDS end, non-inclusive\n"
 "    source varchar(255) not null,	# Source of evidence\n"
 "    accession varchar(255) not null,	# Genbank/uniProt accession\n"
 "    score double not null,	# 0-1000, higher is better\n"
 "    startComplete tinyint unsigned not null,	# Starts with ATG?\n"
 "    endComplete tinyint unsigned not null,	# Ends with stop codon?\n"
 "    cdsCount int not null,	# Number of CDS blocks\n"
 "    cdsStarts longblob not null,	# Start positions of CDS blocks\n"
 "    cdsSizes longblob not null,	# Sizes of CDS blocks\n"
 "              #Indices\n"
 "    INDEX(name(32))\n"
 ");\n" ;
 
 void hgLoadCdsEvidence(char *database, char *table, char *inFile)
 /* hgLoadCdsEvidence - Load table with cdsEvidence.. */
 {
 struct dyString *dy = dyStringNew(4*1024);
 struct sqlConnection *conn = sqlConnect(database);
 if (!oldTable)
     {
     sqlDyStringPrintf(dy, createSql, table);
     sqlRemakeTable(conn, table, dy->string);
     dyStringClear(dy);
     }
 sqlLoadTabFile(conn, inFile, table, 0);
 sqlDisconnect(&conn);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 oldTable = optionExists("oldTable");
 if (argc != 4)
     usage();
 hgLoadCdsEvidence(argv[1], argv[2], argv[3]);
 return 0;
 }