4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c src/hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c
index 9a2aefe..08fe162 100644
--- src/hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c
+++ src/hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c
@@ -1,82 +1,82 @@
 /* hgMrnaRefseq - creates xref data between mRNAand RefSeq from LocusLink data contained in 2 tables from a temporary DB */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "hCommon.h"
 #include "hdb.h"
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "hgMrnaRefseq - creates xref data between mRNAand RefSeq from LocusLink data contained in 2 tables from a temporary DB"
   "usage:\n"
   "   hgMrnaRefseq xxxx\n"
   "      xxxx is the genome database name\n"
   "example: hgMrnaRefseq hg16\n");
 }
 
 int main(int argc, char *argv[])
 {
 struct sqlConnection *conn, *conn2;
 char query[256], query2[256];
 struct sqlResult *sr, *sr2;
 char **row, **row2;
     
 char *chp;
 FILE *o1;
 
 char *gbAC;		/* GenBank accession.version */
 char *locusID2;	/* LocusLink ID */
 char *refAC;	/* Refseq accession.version */
 char *dbName; 
 
 if (argc != 2) usage();
 dbName = argv[1];
 
 conn = hAllocConn(dbName);
 conn2= hAllocConn(dbName);
 
 o1 = fopen("j.dat", "w");
     
 sqlSafef(query2, sizeof query2, "select * from %sTemp.locus2Ref0;", dbName);
 sr2 = sqlMustGetResult(conn2, query2);
 row2 = sqlNextRow(sr2);
 while (row2 != NULL)
     {
     locusID2 	= row2[0];
     refAC 	= row2[1];
 
     sqlSafef(query, sizeof query, "select * from %sTemp.locus2Acc0 where locusID=%s and seqType='m';", dbName, locusID2);
     sr = sqlMustGetResult(conn, query);
     row = sqlNextRow(sr);
     while (row != NULL)
     	{
 	gbAC 		= row[1];
 
 	chp = strstr(gbAC, ".");
 	if (chp != NULL) *chp = '\0';
     			
 	chp = strstr(refAC, ".");
 	if (chp != NULL) *chp = '\0';
     			
 	fprintf(o1, "%s\t%s\n", gbAC, refAC);
 			
 	row = sqlNextRow(sr);
 	}
     row2 = sqlNextRow(sr2);
     }
 		
 fclose(o1);
 hFreeConn(&conn);
 hFreeConn(&conn2);
 sqlFreeResult(&sr2);
 
 mustSystem("cat j.dat|sort|uniq >mrnaRefseq.tab");
 printf("mrnaRefseq.tab created.\n");
 mustSystem("rm j.dat");
 return(0);
 }