4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/near/hgEmblProtLinks/hgEmblProtLinks.c src/hg/near/hgEmblProtLinks/hgEmblProtLinks.c
index 18b9822..f2ec996 100644
--- src/hg/near/hgEmblProtLinks/hgEmblProtLinks.c
+++ src/hg/near/hgEmblProtLinks/hgEmblProtLinks.c
@@ -1,75 +1,75 @@
 /* hgEmblProtLinks - Parse EMBL flat file into protein link table. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "emblParse.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "hgEmblProtLinks - Parse EMBL flat file into protein link table\n"
   "usage:\n"
   "   hgEmblProtLinks in.embl out.tab\n"
   "Note, this is just an experiment at the moment.\n"
   "options:\n"
   "   -xxx=XXX\n"
   );
 }
 
 char *org = "Caenorhabditis elegans";
 
 static struct optionSpec options[] = {
    {NULL, 0},
 };
 
 boolean emblLineGroup(struct lineFile *lf, char type[16], struct dyString *val);
 /* Read next line of embl file.  Read line after that too if it
  * starts with the same type field. Return FALSE at EOF. */
 
 char *findOrEmpty(struct hash *hash, char *name)
 /* Return value if it exists in hash or "". */
 {
 char *s = hashFindVal(hash, name);
 if (s == NULL)
     s = "";
 return s;
 }
 
 void hgEmblProtLinks(char *inName, char *outName)
 /* hgEmblProtLinks - Parse EMBL flat file into protein link table. */
 {
 struct lineFile *lf = lineFileOpen(inName, TRUE);
 FILE *f = mustOpen(outName, "w");
 struct hash *hash;
 
 while ((hash = emblRecord(lf)) != NULL)
     {
     char *os = hashFindVal(hash, "OS");
     if (os != NULL && startsWith(org, os))
         {
 	char *gn = findOrEmpty(hash, "GN");
 	char *de = findOrEmpty(hash, "DE");
 	char *ac = findOrEmpty(hash, "AC");
 	fprintf(f, "%s\t%s\t%s\n", gn, de, ac);
 	}
     freeHashAndVals(&hash);
     }
 lineFileClose(&lf);
 carefulClose(&f);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 3)
     usage();
 hgEmblProtLinks(argv[1], argv[2]);
 return 0;
 }