4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/near/hprdXmlToTab/hprdXmlToTab.c src/hg/near/hprdXmlToTab/hprdXmlToTab.c
index fccd7d6..b580049 100644
--- src/hg/near/hprdXmlToTab/hprdXmlToTab.c
+++ src/hg/near/hprdXmlToTab/hprdXmlToTab.c
@@ -1,66 +1,66 @@
 /* Copyright (C) 2009 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "hprd.h"
 
 void usage(char *self)
 /* show usage */
 {
 errAbort("Syntax error. Correct usage:\n%s input.xml output.P2P.tab complex.tab\n",self);
 }
 
 int main(int argc, char *argv[])
 {
 if (argc != 4)
     usage(argv[0]);
 
 struct hprdEntrySet *entrySet = hprdEntrySetLoad(argv[1]);
 struct hprdInteraction *i=NULL, *iL = entrySet->hprdEntry->hprdInteractionList->hprdInteraction;
 int iCount = 0;
 FILE *fp = mustOpen(argv[2], "w");
 FILE *fc = mustOpen(argv[3], "w");
 
 //uglyf("interactionList count = %d\n", slCount(iList));
 
 for(i=iL;i;i=i->next)
     {
     ++iCount;
     struct hprdParticipant *q=NULL, *p=NULL, *pL = i->hprdParticipantList->hprdParticipant;
     int pCount = slCount(pL);
     if (pCount < 2)
 	{
 	warn("participant count=%d which is < 2 for participant id = %s\n", pCount, pL->id);
 	}
     else
 	{
 
 	double distance = pCount==2 ? 1.0 : 1.5;
 	for(p=pL;p;p=p->next)
 	    for(q=p->next;q;q=q->next)
 		fprintf(fp, "%s\t%s\t%f\n", 
 		    p->hprdInteractorRef->text, 
 		    q->hprdInteractorRef->text,
 		    distance);
 	if (pCount > 2)  /* complex */
 	    for(p=pL;p;p=p->next)
 		{
 		fprintf(fc,"%d\t%s\n", iCount, p->hprdInteractorRef->text );
 		}
 	    
 	}
     }
 
 
 uglyf("interaction count = %d\n", iCount);
 
 carefulClose(&fp);
 carefulClose(&fc);
 
 hprdEntrySetFree(&entrySet);
 
 
 
 return 0;
 }