4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/near/pepPredToFa/pepPredToFa.c src/hg/near/pepPredToFa/pepPredToFa.c index 6d1f734..7d5dbf8 100644 --- src/hg/near/pepPredToFa/pepPredToFa.c +++ src/hg/near/pepPredToFa/pepPredToFa.c @@ -1,57 +1,57 @@ /* pepPredToFa - Convert a pepPred table to fasta format. */ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #include "common.h" #include "linefile.h" #include "hash.h" #include "options.h" #include "jksql.h" #include "pepPred.h" #include "fa.h" void usage() /* Explain usage and exit. */ { errAbort( "pepPredToFa - Convert a pepPred table to fasta format\n" "usage:\n" " pepPredToFa database table output.fa\n" "options:\n" " -xxx=XXX\n" ); } static struct optionSpec options[] = { {NULL, 0}, }; void pepPredToFa(char *database, char *table, char *outName) /* pepPredToFa - Convert a pepPred table to fasta format. */ { FILE *f = mustOpen(outName, "w"); struct sqlConnection *conn = sqlConnect(database); struct sqlResult *sr; char **row; char query[512]; struct pepPred pp; sqlSafef(query, sizeof(query), "select * from %s", table); sr = sqlGetResult(conn, query); while((row = sqlNextRow(sr)) != NULL) { pepPredStaticLoad(row, &pp); faWriteNext(f, pp.name, pp.seq, strlen(pp.seq)); } } int main(int argc, char *argv[]) /* Process command line. */ { optionInit(&argc, argv, options); if (argc != 4) usage(); pepPredToFa(argv[1], argv[2], argv[3]); return 0; }