4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/oneShot/clumpEst3/clumpEst3.c src/hg/oneShot/clumpEst3/clumpEst3.c
index edc05c6..c9b868a 100644
--- src/hg/oneShot/clumpEst3/clumpEst3.c
+++ src/hg/oneShot/clumpEst3/clumpEst3.c
@@ -1,66 +1,66 @@
 /* clumpEst3 - Clump together 3' ESTs. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "est3.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "clumpEst3 - Clump together 3' ESTs\n"
   "usage:\n"
   "   clumpEst3 in out\n");
 }
 
 void writeEst3(FILE *f, struct est3 *e3)
 /* Write out non-numm est3's. */
 {
 if (e3 != NULL)
     est3TabOut(e3, f);
 }
 
 void clumpEst3(char *inName, char *outName)
 /* clumpEst3 - Clump together 3' ESTs. */
 {
 struct lineFile *lf = lineFileOpen(inName, TRUE);
 struct est3 *cum = NULL, *cur;
 FILE *f = mustOpen(outName, "w");
 char *words[8];
 int wordCount;
 
 while ((wordCount = lineFileChop(lf, words)) > 0)
     {
     cur = est3Load(words);
     if (cum == NULL || cur->strand[0] != cum->strand[0] 
        || cur->chromStart - cum->chromEnd > 2000
        || !sameString(cum->chrom, cur->chrom) )
        {
        writeEst3(f, cum);
        est3Free(&cum);
        cum = cur;
        }
     else
        {
        if (cur->chromStart - cum->chromEnd < 100 || cur->estCount > 1)
 	   {
 	   cum->chromEnd = cur->chromEnd;
 	   cum->estCount += cur->estCount;
 	   }
        est3Free(&cur);
        }
     }
 writeEst3(f, cum);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 if (argc != 3)
     usage();
 clumpEst3(argv[1], argv[2]);
 return 0;
 }