4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/oneShot/doRgdGene2UniProt/doRgdGene2UniProt.c src/hg/oneShot/doRgdGene2UniProt/doRgdGene2UniProt.c
index fcd756a..3ea2d34 100644
--- src/hg/oneShot/doRgdGene2UniProt/doRgdGene2UniProt.c
+++ src/hg/oneShot/doRgdGene2UniProt/doRgdGene2UniProt.c
@@ -1,85 +1,85 @@
 /* doRgdGene2ToUniProt - This is a one shot program used in the RGD Genes build pipeline */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "hCommon.h"
 #include "hdb.h"
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "doRgdGene2ToUniProt - This program is part of the RGD Genes build pipeline.\n"
   "             It parses the uniprot_id  col of the gene records of the raw RGD gene data file, GENES_RAT,\n"
   "             and create a xref table between RGD gene ID and UniProt ID.\n"
   "usage:\n"
   "   doRgdGene2ToUniProt db outFileName\n"
   "      db is the database name\n"
   "      outFileName is the filename of the output file\n"
   "example: doRgdGene2ToUniProt rn4 rgdGene2ToUniProt.tab\n");
 }
 
 char *rgdId;
 FILE   *outf;
 
 int main(int argc, char *argv[])
 {
 char *database;
 char *outFn;
 
 struct sqlConnection *conn2;
 char query2[256];
 struct sqlResult *sr2;
 char **row2;
 
 int iCnt;
 
 char *chp1, *chp2;
 
 if (argc != 3) usage();
 
 database = argv[1];
 conn2= hAllocConn(database);
 
 outFn = argv[2];
 outf = mustOpen(outFn, "w");
 
 sqlSafef(query2, sizeof query2, "select gene_rgd_id, uniprot_id from rgdGene2Raw where uniprot_id <> \"\"");
 sr2 = sqlMustGetResult(conn2, query2);
 row2 = sqlNextRow(sr2);
 while (row2 != NULL)
     {
     boolean oneGeneDone;
     
     rgdId = row2[0];
 
     iCnt = 0;
     chp1 = row2[1];
     oneGeneDone = FALSE;
     while (!oneGeneDone) 
     	{
 	iCnt++;
 	chp2 = strstr(chp1,",");
 	if (chp2 != NULL)
 	    {
 	    *chp2 = '\0';
 	    fprintf(outf, "RGD:%s\t%s\n", rgdId, chp1);
             chp2++;
 	    chp1 = chp2;
 	    }
 	else
 	    {
 	    fprintf(outf, "RGD:%s\t%s\n", rgdId, chp1);
 	    oneGeneDone = TRUE;
 	    }
 	}
     row2 = sqlNextRow(sr2);
     }
 sqlFreeResult(&sr2);
 
 fclose(outf);
 hFreeConn(&conn2);
 return(0);
 }