4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/oneShot/fakeHomozygousity/fakeHomozygousity.c src/hg/oneShot/fakeHomozygousity/fakeHomozygousity.c index dc0c53e..cf37080 100644 --- src/hg/oneShot/fakeHomozygousity/fakeHomozygousity.c +++ src/hg/oneShot/fakeHomozygousity/fakeHomozygousity.c @@ -1,59 +1,59 @@ /* fakeHomozygousity - Fake homozygousity data. */ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #include "common.h" #include "linefile.h" #include "hash.h" #include "options.h" #include "jksql.h" #include "hdb.h" void usage() /* Explain usage and exit. */ { errAbort( "fakeHomozygousity - Fake homozygousity data\n" "usage:\n" " fakeHomozygousity XXX\n" "options:\n" " -xxx=XXX\n" ); } static struct optionSpec options[] = { {NULL, 0}, }; void fakeHomozygousity(char *output) /* fakeHomozygousity - Fake homozygousity data. */ { FILE *f = mustOpen(output, "w"); struct sqlConnection *conn = sqlConnect("hg18"); struct sqlResult *sr = sqlGetResult(conn, NOSQLINJ "select chrom,chromStart,chromEnd from ctgPos"); char **row; while ((row = sqlNextRow(sr)) != NULL) { char *chrom = row[0]; int start = sqlUnsigned(row[1]); int end = sqlUnsigned(row[2]); int pos; for (pos = start; pos <end; pos += 10000) { char *homozygous = (((rand()&3)==0) ? "1" : "0"); fprintf(f, "%s\t%d\t%s\n", chrom, pos, homozygous); } } carefulClose(&f); } int main(int argc, char *argv[]) /* Process command line. */ { optionInit(&argc, argv, options); if (argc != 2) usage(); fakeHomozygousity(argv[1]); return 0; }