4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/oneShot/howBadNt/howBadNt.c src/hg/oneShot/howBadNt/howBadNt.c
index 66d9058..37936eb 100644
--- src/hg/oneShot/howBadNt/howBadNt.c
+++ src/hg/oneShot/howBadNt/howBadNt.c
@@ -1,59 +1,59 @@
 /* howBadNt - Figure out how bad NT reversal screwup is. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "howBadNt - Figure out how bad NT reversal screwup is\n"
   "usage:\n"
   "   howBadNt ctg_coords\n");
 }
 
 void howBadNt(char *ntFile)
 /* howBadNt - Figure out how bad NT reversal screwup is. */
 {
 char lastName[256];
 char lastOrientation[16];
 struct lineFile *lf = lineFileOpen(ntFile, TRUE);
 char *row[8];
 int pairCount = 0;
 int revCount = 0;
 int cloneCount = 0;
 
 strcpy(lastName, "");
 while (lineFileRow(lf, row))
     {
     ++cloneCount;
     if (sameString(row[0], lastName))
         {
 	++pairCount;
 	if (!sameString(row[4], lastOrientation))
 	    {
 	    ++revCount;
 	    }
 	}
     else
         {
 	strcpy(lastName, row[0]);
 	}
     strcpy(lastOrientation, row[4]);
     }
 lineFileClose(&lf);
 printf("%d clones, %d adjacencies, %d reversed (%4.3f%%)\n",
 	cloneCount, pairCount, revCount, 100.0*revCount/(double)pairCount);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 if (argc != 2)
     usage();
 howBadNt(argv[1]);
 return 0;
 }