4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/oneShot/mapToSts/mapToSts.c src/hg/oneShot/mapToSts/mapToSts.c
index 690daa9..f7a45c5 100644
--- src/hg/oneShot/mapToSts/mapToSts.c
+++ src/hg/oneShot/mapToSts/mapToSts.c
@@ -1,112 +1,112 @@
 /* mapToSts - convert from WashU map file to an STS file. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 
 
 void usage()
 /* Explain usage and exit */
 {
 errAbort(
 "mapToSts - convert from WashU map to STS file\n"
 "usage:\n"
 "   mapToSts map.wu out.sts");
 }
 
 boolean isAcc(char *s)
 /* Return TRUE if s looks to be an accession name. */
 {
 int len = strlen(s);
 if (len < 6 || len > 8)
     return FALSE;
 if (!isupper(s[0]))
     return FALSE;
 if (!isdigit(s[len-1]))
     return FALSE;
 return TRUE;
 }
 
 struct cloneSts
 /* A clone with an STS position. */
     {
     struct cloneSts *next;	/* Next in list. */
     char *cloneName;
     char *chromosome;
     float stsPos;
     };
 
 int cmpCloneSts(const void *va, const void *vb)
 /* Compare two cloneSts. */
 {
 const struct cloneSts *a = *((struct cloneSts **)va);
 const struct cloneSts *b = *((struct cloneSts **)vb);
 int dif;
 dif = strcmp(a->chromosome, b->chromosome);
 if (dif == 0)
     {
     if (a->stsPos - b->stsPos < 0.0)
 	dif = -1;
     else
 	dif = 1;
     }
 return dif;
 }
 
 void mapToSts(char *inName, char *outName)
 /* mapToSts - convert from WashU map file to an STS file. */
 {
 struct lineFile *lf = lineFileOpen(inName, TRUE);
 FILE *f = mustOpen(outName, "w");
 int lineSize, wordCount;
 char *line, *words[32];
 struct hash *cloneHash = newHash(16);
 struct hash *chromHash = newHash(6);
 struct hashEl *hel;
 char *acc;
 struct cloneSts *cs, *csList = NULL;
 
 while (lineFileNext(lf, &line, &lineSize))
     {
     wordCount = chopLine(line, words);
     if (wordCount == 11)
 	{
 	acc = words[0];
 	if (isAcc(acc))
 	    {
 	    if ((hel = hashLookup(cloneHash, acc)) == NULL)
 		{
 		AllocVar(cs);
 		hel = hashAdd(cloneHash, acc, cs);
 		cs->cloneName = hel->name;
 		cs->chromosome = hashStoreName(chromHash, words[9]);
 		cs->stsPos = atof(words[10]);
 		slAddHead(&csList, cs);
 		}
 	    else
 		{
 		warn("Duplicate %s", acc);
 		}
 	    }
 	}
     }
 lineFileClose(&lf);
 slSort(&csList, cmpCloneSts);
 for (cs = csList; cs != NULL; cs = cs->next)
     {
     fprintf(f, "%s\t%s\t%0.2f\n", cs->cloneName, cs->chromosome, cs->stsPos);
     }
 fclose(f);
 }
 
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 if (argc != 3)
     usage();
 mapToSts(argv[1], argv[2]);
 return 0;
 }