4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/oneShot/musAliAt/musAliAt.c src/hg/oneShot/musAliAt/musAliAt.c
index a5eafde..0cc7d79 100644
--- src/hg/oneShot/musAliAt/musAliAt.c
+++ src/hg/oneShot/musAliAt/musAliAt.c
@@ -1,62 +1,62 @@
 /* musAliAt - Produce .fa files where mouse alignments hit on chr22. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "cheapcgi.h"
 #include "jksql.h"
 #include "hdb.h"
 #include "psl.h"
 #include "fa.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "musAliAt - Produce .fa files where mouse alignments hit on chr22\n"
   "usage:\n"
   "   musAliAt database chromosome human.fa mouse.fa\n"
   );
 }
 
 void musAliAt(char *database, char *chrom, char *humanFa, char *mouseFa)
 /* musAliAt - Produce .fa files where mouse alignments hit on chr22. */
 {
 char query[256], **row;
 struct sqlResult *sr;
 struct sqlConnection *conn;
 struct dnaSeq *musSeq, *homoSeq;
 struct psl *psl;
 struct hash *musHash = newHash(10);
 FILE *musOut = mustOpen(mouseFa, "w");
 
 hSetDb(database);
 conn = hAllocConn();
 sqlSafef(query, sizeof query, "select * from blatMouse where tName = '%s'", chrom);
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     psl = pslLoad(row);
     if ((musSeq = hashFindVal(musHash, psl->qName)) == NULL)
         {
 	musSeq = hExtSeq(psl->qName);
 	hashAdd(musHash, psl->qName, NULL);
 	faWriteNext(musOut, musSeq->name, musSeq->dna, musSeq->size);
 	freeDnaSeq(&musSeq);
 	}
     pslFree(&psl);
     }
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 cgiSpoof(&argc, argv);
 if (argc != 5)
     usage();
 musAliAt(argv[1], argv[2], argv[3], argv[4]);
 return 0;
 }