4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/orthoMap/orthoEval.h src/hg/orthoMap/orthoEval.h
index 7864a16..9a1c882 100644
--- src/hg/orthoMap/orthoEval.h
+++ src/hg/orthoMap/orthoEval.h
@@ -1,51 +1,51 @@
 /* Copyright (C) 2003 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef ORTHOEVAL_H
 #define ORTHOEVAL_H
 
 #ifndef BORF_H
 #include "borf.h"
 #endif
 
 #ifndef ALTGRAPHX_H
 #include "altGraphX.h"
 #endif
 
 #ifndef BED_H
 #include "bed.h"
 #endif
 
 struct orthoEval
 /* Evaluation for a single mapped mRNA. */
 {
     struct orthoEval *next; /* Next in list. */
     char *orthoBedName;     /* Name of orhtoBed. */
     struct bed *agxBed;     /* Summary of native mRNA's and intronEsts at loci. */
     struct altGraphX *agx;  /* Splicing graph at native loci. */
     struct bed *orthoBed;   /* Bed record created by mapping accession.*/
     struct borf *borf;      /* Results from Victors Solovyev's bestOrf program. */
     int basesOverlap;       /* Number of bases overlapping with transcripts at native loci. */
     char *agxBedName;       /* Name of agxBed that most overlaps, memory not owned here. */
     int numIntrons;         /* Number of introns in orthoBed. Should be orthoBed->exonCount -1. */
     int *inCodInt;         /* Are the introns surrounded in orf (as defined by borf record). */
     int *orientation;       /* Orientation of an intron, -1 = reverse, 0 = not consensus, 1 = forward. */
     int *support;           /* Number of native transcripts supporting each intron. */
     char **agxNames;        /* Names of native agx that support each intron. Memory for names not owned here. */
 };
 
 struct orthoEval *orthoEvalLoad(char *row[]);
 /* Load a row of strings to an orthoEval. */
 
 void orthoEvalFree(struct orthoEval **pEv);
 
 void orthoEvalTabOut(struct orthoEval *ev, FILE *f);
 /* Tab out an orthoEval record. Skipping the agxBed, and agx records. */
 
 struct orthoEval *orthoEvalLoadAll(char *fileName);
 /* Load all orthoEval from a whitespace-separated file.
  * Dispose of this with orthoEvalFreeList(). */
 
 void orthoEvalFree(struct orthoEval **pEv);
 
 #endif /* ORTHOEVAL_H */