4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/protein/kgAliasKgXref/kgAliasKgXref.c src/hg/protein/kgAliasKgXref/kgAliasKgXref.c
index 032c562..b16979a 100644
--- src/hg/protein/kgAliasKgXref/kgAliasKgXref.c
+++ src/hg/protein/kgAliasKgXref/kgAliasKgXref.c
@@ -1,74 +1,74 @@
 /* kgAliasKgXref - generate Known Genes alias list table for RefSeq accession numbers */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "hCommon.h"
 #include "hdb.h"
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "kgAliasKgXref - create gene alias .tab file "
   "usage:\n"
   "   kgAliasKgXref xxxx\n"
   "            xxxx is genome database name\n"
   "example: kgAliasKgXref hg16\n");
 }
 
 int main(int argc, char *argv[])
 {
 struct sqlConnection *conn, *conn2;
 
 char query[256], query2[256];
 struct sqlResult *sr, *sr2;
 char **row, **row2;
  
 char *kgID;
 FILE *o2;
 char *database;
 char *geneSymbol;
 
 char *proteinID;
 
 if (argc != 2) usage();
 database  = cloneString(argv[1]);
 
 conn = hAllocConn(database);
 conn2= hAllocConn(database);
 o2 = mustOpen("jj.dat", "w");
 
 sqlSafef(query2, sizeof query2, "select name, proteinID from %s.knownGene;", database);
 sr2 = sqlMustGetResult(conn2, query2);
 row2 = sqlNextRow(sr2);
 while (row2 != NULL)
     {
     kgID = row2[0];
     proteinID = row2[1];
     sqlSafef(query, sizeof query,"select geneSymbol from %s.kgXref where kgID = '%s';", database, kgID);
     sr = sqlMustGetResult(conn, query);
     row = sqlNextRow(sr);
     while (row != NULL)
    	{
 	geneSymbol = row[0];
 	if (strlen(geneSymbol) >0)
 	     {
 	     fprintf(o2, "%s\t%s\n", kgID, geneSymbol);
 	     }
 	row = sqlNextRow(sr);
 	}
     sqlFreeResult(&sr);
     row2 = sqlNextRow(sr2);
     }
 sqlFreeResult(&sr2);
 carefulClose(&o2);
 hFreeConn(&conn);
 hFreeConn(&conn2);
 
 mustSystem("cat jj.dat|sort|uniq  >kgAliasKgXref.tab");
 mustSystem("rm jj.dat");
     
 return(0);
 }