4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/protein/kgPick0/kgPickPrep.c src/hg/protein/kgPick0/kgPickPrep.c
index 58fd65f..7d8e451 100644
--- src/hg/protein/kgPick0/kgPickPrep.c
+++ src/hg/protein/kgPick0/kgPickPrep.c
@@ -1,73 +1,73 @@
 /* kgPickPrep - prepare input data for kgPick, replacing the cds field with a cds ID */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "hCommon.h"
 #include "hdb.h"
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "kgPickPrep -  prepare input data for kgPick\n"
   "usage:\n"
   "   kgPickPrep tempDb outfile\n"
   "      tempDb is the temp KG DB name\n"
   "      outfile is the output file name\n"
   "example: kgPickPrep kgHg17ETemp kgCandidateZ.tab\n");
 }
 
 int main(int argc, char *argv[])
 {
 struct sqlConnection *conn2;
 char query2[256];
 struct sqlResult *sr2;
 char **row2;
 char *kgTempDb;
 char *outfileName;
 FILE *outf;
 int  alignCnt = 0;
 int  i;
 char *cds;
 char *oldCds;
 int cdsCnt = 0;
 
 if (argc != 3) usage();
 kgTempDb    = argv[1];
 outfileName = argv[2];
 
 outf = mustOpen(outfileName, "w");
 conn2= hAllocConn();
 oldCds = strdup("");
 
 /* go through each KG candidate */
 sqlSafef(query2, sizeof(query2), "select * from %s.kgCandidateY", kgTempDb);
 sr2 = sqlMustGetResult(conn2, query2);
 row2 = sqlNextRow(sr2);
 while (row2 != NULL)
     {
     cds = row2[0];
     if (!sameWord(cds, oldCds))
     	{
 	cdsCnt++;
 	free(oldCds);
 	oldCds = strdup(cds);
 	}
 
    /* put out the cds ID */
    fprintf(outf, "%d\t", cdsCnt);
 
    /* put out the rest of the fields */
    for (i=1; i<7; i++) fprintf(outf, "%s\t",row2[i]); 
    fprintf(outf, "\n");
     
    row2 = sqlNextRow(sr2);
    }
 sqlFreeResult(&sr2);
 
 hFreeConn(&conn2);
 fclose(outf);
 return(0);
 }