4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/protein/lib/uniref.c src/hg/protein/lib/uniref.c
index 5a9eb3d..9b9aa75 100644
--- src/hg/protein/lib/uniref.c
+++ src/hg/protein/lib/uniref.c
@@ -1,156 +1,156 @@
 /* uniref.c was originally generated by the autoSql program, which also 
  * generated uniref.h and uniref.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "uniref.h"
 
 
 void unirefStaticLoad(char **row, struct uniref *ret)
 /* Load a row from uniref table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 strcpy(ret->entryId, row[0]);
 strcpy(ret->type, row[1]);
 strcpy(ret->upId, row[2]);
 strcpy(ret->upAcc, row[3]);
 ret->org = row[4];
 ret->tax = sqlSigned(row[5]);
 ret->len = sqlSigned(row[6]);
 }
 
 struct uniref *unirefLoad(char **row)
 /* Load a uniref from row fetched with select * from uniref
  * from database.  Dispose of this with unirefFree(). */
 {
 struct uniref *ret;
 
 AllocVar(ret);
 strcpy(ret->entryId, row[0]);
 strcpy(ret->type, row[1]);
 strcpy(ret->upId, row[2]);
 strcpy(ret->upAcc, row[3]);
 ret->org = cloneString(row[4]);
 ret->tax = sqlSigned(row[5]);
 ret->len = sqlSigned(row[6]);
 return ret;
 }
 
 struct uniref *unirefLoadAll(char *fileName) 
 /* Load all uniref from a whitespace-separated file.
  * Dispose of this with unirefFreeList(). */
 {
 struct uniref *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileRow(lf, row))
     {
     el = unirefLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct uniref *unirefLoadAllByChar(char *fileName, char chopper) 
 /* Load all uniref from a chopper separated file.
  * Dispose of this with unirefFreeList(). */
 {
 struct uniref *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = unirefLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct uniref *unirefCommaIn(char **pS, struct uniref *ret)
 /* Create a uniref out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new uniref */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 sqlFixedStringComma(&s, ret->entryId, sizeof(ret->entryId));
 sqlFixedStringComma(&s, ret->type, sizeof(ret->type));
 sqlFixedStringComma(&s, ret->upId, sizeof(ret->upId));
 sqlFixedStringComma(&s, ret->upAcc, sizeof(ret->upAcc));
 ret->org = sqlStringComma(&s);
 ret->tax = sqlSignedComma(&s);
 ret->len = sqlSignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void unirefFree(struct uniref **pEl)
 /* Free a single dynamically allocated uniref such as created
  * with unirefLoad(). */
 {
 struct uniref *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->org);
 freez(pEl);
 }
 
 void unirefFreeList(struct uniref **pList)
 /* Free a list of dynamically allocated uniref's */
 {
 struct uniref *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     unirefFree(&el);
     }
 *pList = NULL;
 }
 
 void unirefOutput(struct uniref *el, FILE *f, char sep, char lastSep) 
 /* Print out uniref.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->entryId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->upId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->upAcc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->org);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->tax);
 fputc(sep,f);
 fprintf(f, "%d", el->len);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */