4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/protein/pfamToGoRdf/pfamToGoRdf.c src/hg/protein/pfamToGoRdf/pfamToGoRdf.c
index f145e4b..2f8a7b9 100644
--- src/hg/protein/pfamToGoRdf/pfamToGoRdf.c
+++ src/hg/protein/pfamToGoRdf/pfamToGoRdf.c
@@ -1,80 +1,80 @@
 /* pfamToGoRdf - Turn pfam2go.rdf file to a simple table.. */
 
 /* Copyright (C) 2007 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "xap.h"
 #include "rdf.h"
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "pfamToGoRdf - Turn pfam2go.rdf file to a simple table. The\n"
   "pfam2go.rdf is an XML format downloaded from\n"
   "    http://www.berkeleybop.org/ontologies/#mappings\n"
   "usage:\n"
   "   pfamToGoRdf pfam2go.rdf pfam2go.tab\n"
   "options:\n"
   "   -xxx=XXX\n"
   );
 }
 
 static struct optionSpec options[] = {
    {NULL, 0},
 };
 
 void pfamToGoRdf(char *inRdf, char *outTab)
 /* pfamToGoRdf - Turn pfam2go.rdf file to a simple table.. */
 {
 struct rdfGoGo *go = rdfGoGoLoad(inRdf);
 FILE *f = mustOpen(outTab, "w");
 struct rdfGoTerm *term;
 for (term = go->rdfRdfRDF->rdfGoTerm; term != NULL; term = term->next)
     {
     fprintf(f, "%s\t%s\n", term->rdfGoDbxref->rdfGoReference->text,
     	term->rdfGoAccession->text);
     }
 carefulClose(&f);
 }
 
 #ifdef SOON
 int indent = 0;
 
 void *startHandler(struct xap *xap, char *name, char **atts)
 /* Called at the start of a tag after attributes are parsed. */
 {
 spaceOut(stdout, indent*3);
 ++indent;
 printf("%s\n", name);
 return NULL;
 }
 
 void endHandler(struct xap *xap, char *name)
 /* Called at the start of a tag after attributes are parsed. */
 {
 --indent;
 spaceOut(stdout, indent*3);
 printf("/%s\n", name);
 }
 
 void pfamToGoRdf(char *inRdf, char *outTab)
 /* pfamToGoRdf - Turn pfam2go.rdf file to a simple table.. */
 {
 struct xap *xap = xapNew(startHandler, endHandler, inRdf); 
 xapParseFile(xap, inRdf);
 }
 #endif /* SOON */
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 3)
     usage();
 pfamToGoRdf(argv[1], argv[2]);
 return 0;
 }