4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/pslMaxMap/pslMaxMap.c src/hg/pslMaxMap/pslMaxMap.c
index 3517fa9..8f2f823 100644
--- src/hg/pslMaxMap/pslMaxMap.c
+++ src/hg/pslMaxMap/pslMaxMap.c
@@ -1,72 +1,72 @@
 /* Copyright (C) 2004 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "psl.h"
 
 int maxMap = 10;
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "pslMaxMap - filter out psls that map more than N times\n"
   "usage:\n"
   "   pslMaxMap inPsl outPsl\n"
   "options:\n"
   "   -maxMap=10 (default)\n"
   );
 }
 
 static struct optionSpec options[] = {
    {"maxMap", OPTION_INT},
    {NULL, 0},
 };
 
 struct name
 {
     int count;
 };
 
 void pslMaxMap(char *pslIn, char *pslOut)
 /* pslMaxMap - make clusters out of a psl file. */
 {
 FILE *out = mustOpen(pslOut, "w");
 struct psl *pslList = pslLoadAll(pslIn);
 struct hash *nameHash = newHash(0);  
 struct psl *psl;
 struct name *name;
 
 for(psl = pslList; psl ; psl = psl->next)
     {
     name = hashFindVal(nameHash, psl->qName);
     if (name == NULL)
 	{
 	AllocVar(name);
 	hashAdd(nameHash, psl->qName, name);
 	}
     name->count++;
     }
 for(psl = pslList; psl ; psl = psl->next)
     {
     name = hashFindVal(nameHash, psl->qName);
 
     if (name->count <= maxMap)
 	pslTabOut(psl, out);
     }
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 maxMap = optionInt("maxMap", maxMap);
 if (argc != 3)
     usage();
 pslMaxMap(argv[1], argv[2]);
 return 0;
 }