4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/snp/snpLoad/snpCleanSeq.c src/hg/snp/snpLoad/snpCleanSeq.c
index f7a1f7d..50b4027 100644
--- src/hg/snp/snpLoad/snpCleanSeq.c
+++ src/hg/snp/snpLoad/snpCleanSeq.c
@@ -1,71 +1,71 @@
 /* snpCleanSeq - clean fasta header lines to be compatible with hgLoadSeq. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 
 #include "dystring.h"
 #include "hdb.h"
 #include "linefile.h"
 
 
 static struct hash *snpHash = NULL;
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "snpCleanSeq - clean fasta header lines to be compatible with hgLoadSeq.\n"
   "usage:\n"
   "  snpCleanSeq inputFilename outputFilename\n");
 }
 
 
 void doCleanSeq(char *inputFileName, char *outputFileName)
 {
 FILE *outputFileHandle = NULL;
 struct lineFile *lf;
 char *line;
 char *row[9], *rsId[2];
 struct hashEl *hel = NULL;
 boolean skipping = FALSE;
 
 outputFileHandle = mustOpen(outputFileName, "w");
 lf = lineFileOpen(inputFileName, TRUE);
 
 while (lineFileNext(lf, &line, NULL))
     {
     if (line[0] == '>')
         {
 	skipping = FALSE;
         chopString(line, "|", row, ArraySize(row));
         chopString(row[2], " ", rsId, ArraySize(rsId));
         hel = hashLookup(snpHash, rsId[0]);
 	if (hel)
 	    skipping = TRUE;
 	else
 	    {
 	    hashAdd(snpHash, cloneString(rsId[0]), NULL);
             fprintf(outputFileHandle, ">%s\n", rsId[0]);
 	    }
 	}
     else if (!skipping)
         fprintf(outputFileHandle, "%s\n", line);
     }
 carefulClose(&outputFileHandle);
 lineFileClose(&lf);
 }
 
 
 
 int main(int argc, char *argv[])
 {
 if (argc != 3)
     usage();
 
 snpHash = newHash(16);
 doCleanSeq(argv[1], argv[2]);
 
 return 0;
 }