4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/snp/snpLoad/snpReadSeq.c src/hg/snp/snpLoad/snpReadSeq.c
index da5d5d8..86daf0c 100644
--- src/hg/snp/snpLoad/snpReadSeq.c
+++ src/hg/snp/snpLoad/snpReadSeq.c
@@ -1,90 +1,90 @@
 /* snpReadSeq - Read dbSNP fasta files. */
 /* Split into individual files with a limit of files per directory. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 // needed for makeDir
 #include "portable.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "snpReadSeq - Read dbSNP fasta files and split into directories.\n"
   "usage:\n"
   "  snpReadSeq inputfile logfile outputdir filesPerDirectory \n");
 }
 
 
 void splitSeqFile(char *inputFileName, char *logFileName, char *outputDirBasename, int filesPerDir)
 {
 FILE *outputFileHandle = NULL;
 FILE *logFileHandle = mustOpen(logFileName, "w");
 char outputFileName[64];
 char dirName[64];
 int fileCount = 0;
 int dirCount = 0;
 struct lineFile *lf = lineFileOpen(inputFileName, TRUE);
 char *line;
 int lineSize;
 boolean firstLine = TRUE;
 char *row[9], *rsId[2];
 
 safef(dirName, sizeof(dirName), "%s-%d", outputDirBasename, dirCount);
 makeDir(dirName);
 
 while (lineFileNext(lf, &line, &lineSize))
     {
     if (line[0] == '>')
         {
 	if (!firstLine)
 	    carefulClose(&outputFileHandle);
 	else
 	    firstLine = FALSE;
         fileCount++;
 	if (fileCount == filesPerDir)
 	    {
 	    fileCount = 0;
 	    dirCount++;
             safef(dirName, sizeof(dirName), "%s-%d", outputDirBasename, dirCount);
             makeDir(dirName);
 	}
 	/* use rsId for filename */
 	chopString(line, "|", row, ArraySize(row));
 	chopString(row[2], " ", rsId, ArraySize(rsId));
         safef(outputFileName, sizeof(outputFileName), "%s/%s", dirName, rsId[0]);
         outputFileHandle = mustOpen(outputFileName, "w");
         fprintf(logFileHandle, "%s\t%s/%s\n", rsId[0], dirName, rsId[0]);
 	}
     else
        fprintf(outputFileHandle, "%s\n", line);
     }
 
 carefulClose(&outputFileHandle);
 carefulClose(&logFileHandle);
 lineFileClose(&lf);
 }
 
 int main(int argc, char *argv[])
 {
 char *inputFileName = NULL;
 char *logFileName = NULL;
 char *outputDirBasename = NULL;
 int filesPerDir = 0;
 
 if (argc != 5)
     usage();
 
 inputFileName = argv[1];
 logFileName = argv[2];
 outputDirBasename = argv[3];
 filesPerDir = atoi(argv[4]);
 
 splitSeqFile(inputFileName, logFileName, outputDirBasename, filesPerDir);
 
 return 0;
 }