4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/snp/snpLoad/snpReadSeq2.c src/hg/snp/snpLoad/snpReadSeq2.c
index f0e2bf1..ef243ab 100644
--- src/hg/snp/snpLoad/snpReadSeq2.c
+++ src/hg/snp/snpLoad/snpReadSeq2.c
@@ -1,61 +1,61 @@
 /* snpReadSeq2 - Read dbSNP fasta files; find offset for each rsId. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "snpReadSeq2 - Read dbSNP fasta file and log rsId offset.\n"
   "usage:\n"
   "  snpReadSeq2 directory chrom outputfile\n");
 }
 
 
 void getOffset(char *directoryName, char *chromName, char *outputFileName)
 {
 FILE *outputFileHandle = mustOpen(outputFileName, "w");
 struct lineFile *lf = NULL;
 char *line;
 off_t offset;
 char *row[9], *rsId[2];
 char inputFileName[64];
 
 safef(inputFileName, sizeof(inputFileName), "%s/%s.fa", directoryName, chromName);
 lf = lineFileOpen(inputFileName, TRUE);
 while (lineFileNext(lf, &line, NULL))
     {
     if (line[0] == '>')
         {
 	chopString(line, "|", row, ArraySize(row));
         chopString(row[2], " ", rsId, ArraySize(rsId));
 	offset = lineFileTell(lf);
 	fprintf(outputFileHandle, "%s\t%s\t%ld\n", rsId[0], chromName, offset);
 	}
     }
 
 carefulClose(&outputFileHandle);
 lineFileClose(&lf);
 }
 
 int main(int argc, char *argv[])
 {
 char *directoryName = NULL;
 char *chromName = NULL;
 char *outputFileName = NULL;
 
 if (argc != 4)
     usage();
 
 directoryName = argv[1];
 chromName = argv[2];
 outputFileName = argv[3];
 getOffset(directoryName, chromName, outputFileName);
 
 return 0;
 }