4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/txGraph/txBedToGraph/txBedToGraph.h src/hg/txGraph/txBedToGraph/txBedToGraph.h index c957052..502caec 100644 --- src/hg/txGraph/txBedToGraph/txBedToGraph.h +++ src/hg/txGraph/txBedToGraph/txBedToGraph.h @@ -1,30 +1,30 @@ /* Stuff shared across modules. */ /* Copyright (C) 2008 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ struct linkedBeds /* A list of beds that are from the same transcript with * possible soft edges between them. */ { struct linkedBeds *next; struct bed *bedList; /* Nonempty list of beds, order is important */ char *sourceType; /* "mrna", "refSeq", etc. not alloced here */ int chromStart,chromEnd; /* Bounds in genome. */ int id; /* Corresponds to source ID when filled in. */ }; struct txGraph *makeGraph(struct linkedBeds *lbList, int maxBleedOver, int maxUncheckedBleed, struct nibTwoCache *seqCache, double singleExonMaxOverlap, char *name); /* Create a graph corresponding to linkedBedsList. * The maxBleedOver parameter controls how much of a soft edge that * can be cut off when snapping to a hard edge. The singleExonMaxOverlap * controls what ratio of a single exon transcript can overlap spliced * transcripts */ boolean trustedSource(char *sourceType); /* Return TRUE source type is trusted (refSeq or something similar). */ boolean noCutSource(char *sourceType); /* Return TRUE if source is not to be truncated during snap to operation. */