4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/visiGene/gensat/gensatFixFull/gensatFixFull.c src/hg/visiGene/gensat/gensatFixFull/gensatFixFull.c
index 19e7ce6..55ff87d 100644
--- src/hg/visiGene/gensat/gensatFixFull/gensatFixFull.c
+++ src/hg/visiGene/gensat/gensatFixFull/gensatFixFull.c
@@ -1,80 +1,80 @@
 /* gensatFixFull - Fix a problem that arose from image magic convert not handling .full in filename 
  * during tiling.  Should be a one-time fix.. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "portable.h"
 #include "jksql.h"
 #include "dystring.h"
 
 
 char *database = "visiGene";
 char *thumbDir = "/cluster/store11/visiGene/gbdb/200/inSitu/Mouse/gensat";
 char *fullDir = "/cluster/store11/visiGene/gbdb/full/inSitu/Mouse/gensat";
 char *downloadDir = "/cluster/store11/visiGene/offline/gensat/Institutions";
 int gensatId = 706;
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "gensatFixFull - Fix a problem that arose from image magic convert not handling .full "
   "in filename during tiling.  Should be a one-time fix.\n"
   "usage:\n"
   "   gensatFixFull caption.txt\n"
   "options:\n"
   "   -xxx=XXX\n"
   );
 }
 
 static struct optionSpec options[] = {
    {NULL, 0},
 };
 
 
 void gensatFixFull(char *captionFile)
 /* Fix missing captions. */
 {
 struct lineFile *lf = lineFileOpen(captionFile, TRUE);
 char *row[2];
 struct dyString *sql = dyStringNew(0);
 struct sqlConnection *conn = sqlConnect(database);
 struct hash *capHash = newHash(16);
 while (lineFileRowTab(lf, row))
     {
     int captionId;
     char *submitId = row[0];
     char *caption = row[1];
     captionId = hashIntValDefault(capHash, caption, 0);
     if (captionId == 0)
         {
 	dyStringClear(sql);
 	sqlDyStringPrintf(sql, "insert into caption values(default, '%s')", caption);
 	sqlUpdate(conn, sql->string);
 	verbose(1, "%s\n", sql->string);
 	captionId = sqlLastAutoId(conn);
 	hashAddInt(capHash, caption, captionId);
 	}
     dyStringClear(sql);
     sqlDyStringPrintf(sql, "update imageFile set caption=%d ", captionId);
     sqlDyStringPrintf(sql, "where submissionSet=%d ", gensatId);
     sqlDyStringPrintf(sql, "and submitId = '%s'", submitId);
     sqlUpdate(conn, sql->string);
     verbose(1, "%s\n", sql->string);
     }
 dyStringFree(&sql);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 2)
     usage();
 gensatFixFull(argv[1]);
 return 0;
 }