4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/visiGene/vgProbeTrack/vgPrb.h src/hg/visiGene/vgProbeTrack/vgPrb.h index 767c063..9de0129 100644 --- src/hg/visiGene/vgProbeTrack/vgPrb.h +++ src/hg/visiGene/vgProbeTrack/vgPrb.h @@ -1,91 +1,91 @@ /* vgPrb.h was originally generated by the autoSql program, which also * generated vgPrb.c and vgPrb.sql. This header links the database and * the RAM representation of objects. */ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef VGPRB_H #define VGPRB_H #ifndef JKSQL_H #include "jksql.h" #endif #define VGPRB_NUM_COLS 10 struct vgPrb /* Permanent Probes defining vgPrb_ id */ { struct vgPrb *next; /* Next in singly linked list. */ int id; /* ID of probeExt */ char *type; /* Type of probe - probe,primersMrna,primersGenome,fPrimer,bac,acc,gene */ char *seq; /* Probe sequence, if any */ char *tName; /* mRNA Accession or a chromosome, if any */ int tStart; /* Start of target, if any */ int tEnd; /* End of target, if any */ char tStrand[2]; /* + or if reverse-complemented then - */ char *db; /* assembly/source used to define this sequence originally */ int taxon; /* taxon+seq for unique identity */ char *state; /* use for multiple passes? e.g. new,isPcr,seq,etc */ }; void vgPrbStaticLoad(char **row, struct vgPrb *ret); /* Load a row from vgPrb table into ret. The contents of ret will * be replaced at the next call to this function. */ struct vgPrb *vgPrbLoad(char **row); /* Load a vgPrb from row fetched with select * from vgPrb * from database. Dispose of this with vgPrbFree(). */ struct vgPrb *vgPrbLoadAll(char *fileName); /* Load all vgPrb from whitespace-separated file. * Dispose of this with vgPrbFreeList(). */ struct vgPrb *vgPrbLoadAllByChar(char *fileName, char chopper); /* Load all vgPrb from chopper separated file. * Dispose of this with vgPrbFreeList(). */ #define vgPrbLoadAllByTab(a) vgPrbLoadAllByChar(a, '\t'); /* Load all vgPrb from tab separated file. * Dispose of this with vgPrbFreeList(). */ struct vgPrb *vgPrbLoadByQuery(struct sqlConnection *conn, char *query); /* Load all vgPrb from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with vgPrbFreeList(). */ void vgPrbSaveToDb(struct sqlConnection *conn, struct vgPrb *el, char *tableName, int updateSize); /* Save vgPrb as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */ struct vgPrb *vgPrbCommaIn(char **pS, struct vgPrb *ret); /* Create a vgPrb out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new vgPrb */ void vgPrbFree(struct vgPrb **pEl); /* Free a single dynamically allocated vgPrb such as created * with vgPrbLoad(). */ void vgPrbFreeList(struct vgPrb **pList); /* Free a list of dynamically allocated vgPrb's */ void vgPrbOutput(struct vgPrb *el, FILE *f, char sep, char lastSep); /* Print out vgPrb. Separate fields with sep. Follow last field with lastSep. */ #define vgPrbTabOut(el,f) vgPrbOutput(el,f,'\t','\n'); /* Print out vgPrb as a line in a tab-separated file. */ #define vgPrbCommaOut(el,f) vgPrbOutput(el,f,',',','); /* Print out vgPrb as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* VGPRB_H */