4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/lib/longTabix.c src/lib/longTabix.c index 43240d3..ba33f2e 100644 --- src/lib/longTabix.c +++ src/lib/longTabix.c @@ -1,45 +1,45 @@ /* longTabix -- long range pairwise interaction format, from Wash U and Ensembl * Documented here: http://wiki.wubrowse.org/Long-range * and here: http://www.ensembl.org/info/website/upload/pairwise.html */ /* Copyright (C) 2017 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #include "common.h" #include "asParse.h" #include "annoStreamer.h" #include "bedTabix.h" static char *longTabixAutoSqlString = "table longTabix\n" "\"Long Range Tabix file. Each interaction is represented by two items/regions in the file. \"\n" " (\n" " string chrom; \"Reference sequence chromosome or scaffold\"\n" " uint chromStart; \"Start position in chromosome\"\n" " uint chromEnd; \"End position in chromosome\"\n" " string interactingRegion; \"(e.g. chrX:123-456,3.14, where chrX:123-456 is the coordinate of the mate, and 3.14 is the score of the interaction or (or comma-separated RGB value)\"\n" " uint id; \"Unique Id\"\n" " char[1] strand; \"+ or -\"\n" " )\n" ; struct asObject *longTabixAsObj() // Return asObject describing fields of longTabix file { return asParseText(longTabixAutoSqlString); } struct annoStreamLongTabix { struct annoStreamer streamer; // Parent class members & methods // Private members char *asWords[6]; // Current row of longTabix with genotypes squashed for autoSql struct bedTabixFile *btf; // longTabix parsed header and file object int numFileCols; // Number of columns in longTabix file. int maxRecords; // Maximum number of annoRows to return. int recordCount; // Number of annoRows we have returned so far. boolean eof; // True when we have hit end of file or maxRecords };