4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/utils/geneStarts/geneStarts.c src/utils/geneStarts/geneStarts.c index f41bab8..7ea420c 100644 --- src/utils/geneStarts/geneStarts.c +++ src/utils/geneStarts/geneStarts.c @@ -1,50 +1,50 @@ /* geneStarts - print start of genes in database. */ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #include "common.h" #include "jksql.h" #include "genePred.h" void usage() /* Explain usage and exit. */ { errAbort( "geneStarts - print start of genes in database\n" "usage:\n" " geneStarts chromosome start end\n"); } void geneStarts(char *chromosome, int start, int end) /* geneStarts - print start of genes in database. */ { struct sqlConnection *conn = sqlConnect("hg3"); struct sqlResult *sr; char **row; char query[256]; struct genePred *gp; sqlSafef(query, sizeof query, "select * from genieKnown where chrom = '%s' and txStart >= %d and txStart < %d", chromosome, start, end); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { gp = genePredLoad(row); printf("%s on %s:%d-%d\n", gp->name, gp->chrom, gp->txStart, gp->txEnd); } sqlFreeResult(&sr); sqlDisconnect(&conn); } int main(int argc, char *argv[]) /* Process command line. */ { if (argc != 4) usage(); if (!isdigit(argv[2][0]) || !isdigit(argv[3][0])) usage(); geneStarts(argv[1], atoi(argv[2]), atoi(argv[3])); return 0; }