15973bdabacf5ddf5dd9289d05e83a7cd4080dbb braney Tue Nov 9 09:12:48 2021 -0800 support for bigRmsk from Robert Hubley robert.hubley@isbscience.org diff --git src/hg/hgc/hgc.h src/hg/hgc/hgc.h index 7950bcb..c70e58c 100644 --- src/hg/hgc/hgc.h +++ src/hg/hgc/hgc.h @@ -549,27 +549,28 @@ // Any extra bed or bigBed fields (defined in as and occurring after N in bed N + types. // sr may be null for bigBeds. // Returns number of extra fields actually printed. struct slPair *parseDetailsTablUrls(struct trackDb *tdb); /* Parse detailsUrls setting string into an slPair list of {offset column name, fileOrUrl} */ char *readOneLineMaybeBgzip(char *fileOrUrl, bits64 offset, bits64 len); /* If fileOrUrl is bgzip-compressed and indexed, then use htslib's bgzf functions to * retrieve uncompressed data from offset; otherwise (plain text) use udc. If len is 0, * read up to next '\n' delimiter. */ #define NUCCORE_SEARCH "https://www.ncbi.nlm.nih.gov/sites/entrez?db=nuccore&cmd=search&term=" void doJRepeat (struct trackDb *tdb, char *repeat); +void doBigRmskRepeat (struct trackDb *tdb, char *repeat); /* New RepeatMasker Visualization defined in joinedRmskClick.c */ INLINE char* strOrNbsp(char* val) /* return val if not empty otherwise HTML entity */ { return isEmpty(val) ? " " : val; } void doInteractDetails(struct trackDb *tdb, char *item); /* Details of interaction item */ #endif