b5c461e5c49abf9eb5a708e2b63243555b2362da
braney
  Wed Nov 10 18:05:28 2021 -0800
first cut at a sequence logo track, also some makeDoc for gene tracks

diff --git src/hg/makeDb/doc/ucscGenes/hg38.gencodeV39.sh src/hg/makeDb/doc/ucscGenes/hg38.gencodeV39.sh
new file mode 100644
index 0000000..2e27324
--- /dev/null
+++ src/hg/makeDb/doc/ucscGenes/hg38.gencodeV39.sh
@@ -0,0 +1,10 @@
+screen -S knownGeneV39
+PATH=$HOME/kent/src/hg/utils/otto/knownGene":$PATH"
+cp /hive/data/genomes/hg38/bed/gencodeV38/build/buildEnv.sh  buildEnv.sh
+
+# edit buildEnv.sh
+
+cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.files.txt  ${GENCODE_VERSION}.files.txt
+cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.tables.txt  ${GENCODE_VERSION}.tables.txt
+
+buildKnown.sh &