c11558b1ff481df5fe70896af27eeeaa15526147
dschmelt
  Tue Nov 9 15:43:13 2021 -0800
Removing aliases refs #28322

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 438ae47..4455806 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -34643,50 +34643,50 @@
     2735990533 bases of 2999027915 (91.229%) in intersection
 
     cat fb.gorGor6.chainSynHg19Link.txt
     2726237067 bases of 2999027915 (90.904%) in intersection
 
     time (doRecipBest.pl -load -workhorse=hgwdev -buildDir=`pwd` gorGor6 hg19) > rbest.log 2>&1 &
     # real    70m15.001s
 
     sed -e 's/^/    # /;' fb.gorGor6.chainRBest.Hg19.txt
     # 2694784811 bases of 2999027915 (89.855%) in intersection
 
 ##############################################################################
 
 # JASPAR Track integration by Daniel 8/20/21
     cd ~/kent/src/hg/makeDb/trackDb 
-    v human/jaspar.ra 
+    vi human/jaspar.ra 
     curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hg19/trackDb.txt >> human/jaspar.ra 
     cd /hive/data/genomes/hg19/bed
     mkdir jaspar
     cd jaspar
     wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg19/JASPAR2018_hg19_all_chr.bb
     wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_hg19.bb
     mv JASPAR2020_hg19.bb JASPAR2020.bb
     mv JASPAR2018_hg19_all_chr.bb JASPAR2018.bb
     cd /gbdb/hg19
     mkdir jaspar
     cd jaspar
     ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2018.bb .
     ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2020.bb .
-    tdb
-    v human/jaspar.html  
+    cd ~/kent/src/hg/makeDb/trackDb
+    vi human/jaspar.html  
     curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/JASPAR2018_TFBS_help.html >> human/jaspar.html 
 
 ###############################################################################
 
 # JASPAR 2022 track addition by Daniel 10/11/21
 
 cd ~/kent/src/hg/makeDb/trackDb
 curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hg19/trackDb.txt | head -n16 >> human/jaspar.ra
-v human/jaspar.ra
+vi human/jaspar.ra
 cd /hive/data/genomes/hg19/bed/jaspar
 wget http://expdatdbta.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg19.bb
 mv JASPAR2022_hg19.bb JASPAR2022.bb
 cd /gbdb/hg19/jaspar
 ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2022.bb .
-tdb
-v human/jaspar.html
+cd ~/kent/src/hg/makeDb/trackDb
+vi human/jaspar.html