c11558b1ff481df5fe70896af27eeeaa15526147 dschmelt Tue Nov 9 15:43:13 2021 -0800 Removing aliases refs #28322 diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt index 0dbc115..2766c32 100644 --- src/hg/makeDb/doc/mm10.txt +++ src/hg/makeDb/doc/mm10.txt @@ -18434,32 +18434,32 @@ sed -e 's/^/ # /;' fb.canFam6.chainMm10Link.txt # 747891292 bases of 2312743346 (32.338%) in intersection sed -e 's/^/ # /;' fb.canFam6.chainSynMm10Link.txt # 721253430 bases of 2312743346 (31.186%) in intersection time (doRecipBest.pl -load -workhorse=hgwdev canFam6 mm10 \ -buildDir=`pwd` -workhorse=hgwdev) > rbest.log 2>&1 & # real 165m54.013s sed -e 's/^/ # /;' fb.canFam6.chainRBest.Mm10.txt # 730713145 bases of 2312743346 (31.595%) in intersection ############################################################################## # JASPAR mouse track addition by Daniel 10/11/21 -tdb -v mouse/jaspar.ra +cd ~/kent/src/hg/makeDb/trackDb +vi mouse/jaspar.ra curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/mm10/trackDb.txt >> mouse/jaspar.ra cd /hive/data/genomes/mm10/bed mkdir jaspar cd jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_mm10.bb wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_mm10.bb mv JASPAR2022_mm10.bb JASPAR2022.bb mv JASPAR2020_mm10.bb JASPAR2020.bb cd /gbdb/mm10 mkdir jaspar cd jaspar ln -s /hive/data/genomes/mm10/bed/jaspar/JASPAR2022.bb . ln -s /hive/data/genomes/mm10/bed/jaspar/JASPAR2020.bb .