b4946dbcea6eb9677cd8a09b2a8f499a0bde0b54
dschmelt
  Wed Nov 10 14:34:32 2021 -0800
Edits to OrphaNet track refs #14319

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 971e989..007f6e1 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -5428,26 +5428,28 @@
 labelFields gene, name
 defaultLabelFields gene, name
 noScoreFilter on
 group covid 
 color 179,0,0
 visibility hide
 bigDataUrl /gbdb/$D/covidMuts/covidMuts.bb
 multiRegionsBedUrl /gbdb/hg19/covidMuts/covidMuts.regions.bed
  
 track orphadata
 bigDataUrl /gbdb/$D/bbi/orphanet/orphadata.bb
 shortLabel Orphanet
 longLabel Orphadata: Aggregated Data From Orphanet
 group phenDis
 type bigBed 9 +
+bedNameLabel OrphaCode
+url http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$
+urlLabel OrphaNet Phenotype Link:
 urls ensemblID="https://grch37.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" pmid="https://pubmed.ncbi.nlm.nih.gov/$$" orphaCode="http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$" omim="https://www.omim.org/entry/$$?search=$$&highlight=$$" hgnc="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$"
 skipEmptyFields on
 skipFields name,score,itemRgb
 mouseOver Gene: $geneSymbol, Disorder: $disorder, Inheritance(s): $inheritance, Onset: $onsetList
 filterValues.assnType Biomarker tested in,Candidate gene tested in,Disease-causing germline mutation(s) (gain of function) in,Disease-causing germline mutation(s) (loss of function) in,Disease-causing germline mutation(s) in,Disease-causing somatic mutation(s) in,Major susceptibility factor in,Modifying germline mutation in,Part of a fusion gene in,Role in the phenotype of
 filterValues.inheritance Autosomal dominant,Autosomal recessive,Mitochondrial inheritance,Multigenic/multifactorial,No data available,Not applicable,Oligogenic,Semi-dominant,Unknown,X-linked dominant,X-linked recessive,Y-linked
 filterValues.onsetList Adolescent,Adult,All ages,Antenatal,Childhood,Elderly,Infancy,Neonatal,No data available
 itemRgb on
-
-
+pennantIcon New red ../goldenPath/newsarch.html#111021 "Released Nov. 10, 2021"