e18510fd8cce5a41aac912da2ca49fa910e2bc5f
markd
  Fri Nov 12 07:35:55 2021 -0800
updated doc for metabat common name fix

diff --git src/hg/makeDb/doc/myoLuc1.txt src/hg/makeDb/doc/myoLuc1.txt
index ea77683..b918ca2 100644
--- src/hg/makeDb/doc/myoLuc1.txt
+++ src/hg/makeDb/doc/myoLuc1.txt
@@ -1,18 +1,21 @@
 # for emacs: -*- mode: sh; -*-
 
 # microbat (  Myotis lucifugus )
+
+# NOTE: "microbat" is not the ncorrect common name, it is "Little brown bat"
+
 #########################################################################
 # DOWNLOAD SEQUENCE (DONE braney 2008-07-11)
     ssh kkstore05
     mkdir /cluster/store12/myoLuc1
     ln -s /cluster/store12/myoLuc1 /cluster/data
     mkdir /cluster/data/myoLuc1/broad
     cd /cluster/data/myoLuc1/broad
 
     wget --timestamping \
 ftp://ftp.broad.mit.edu/pub/assemblies/mammals/microbat/myoLuc1/assembly.agp \
 ftp://ftp.broad.mit.edu/pub/assemblies/mammals/microbat/myoLuc1/assembly.bases.gz \
 ftp://ftp.broad.mit.edu/pub/assemblies/mammals/microbat/myoLuc1/assembly.quals.gz 
     md5sum ass* > assembly.md5sum
 
 
@@ -188,15 +191,31 @@
 # 17770: ENSMLUT00000003427 no exonFrame on CDS exon 10
 # 32743: ENSMLUT00000009601 no exonFrame on CDS exon 1
 '_EOF_'
 #  << happy emacs
 
     doEnsGeneUpdate.pl -ensVersion=51 myoLuc1.ensGene.ra
     ssh hgwdev
     cd /hive/data/genomes/myoLuc1/bed/ensGene.51
     featureBits myoLuc1 ensGene
     # 24559555 bases of 1673855868 (1.467%) in intersection
 
  *** All done!  (through the 'makeDoc' step)
  *** Steps were performed in /hive/data/genomes/myoLuc1/bed/ensGene.51
 
 ############################################################################
+# 2021-11-11 Fix common name (2021-11-11 markd)
+
+# It was discovered that "microbat" is not is a common name, but a suborder
+# of Microchiroptera consisting of ~1000 bat species.  The correct 
+# common name for Myotis lucifugus is "Little brown bat"
+
+hgsql -e 'update dbDb set organism="Little brown bat" where name="myoLuc1";' hgcentraltest
+
+hgsql -e 'update dbDb set genome="Little brown bat" where name="myoLuc1";' hgcentraltest
+
+hgsql -e 'update genomeClade set genome="Little brown bat" where genome="Microbat";' hgcentraltest
+
+hgsql -e 'update defaultDb set genome="Little brown bat" where name="myoLuc1";' hgcentraltest
+
+
+#########################################################################