e18510fd8cce5a41aac912da2ca49fa910e2bc5f
markd
  Fri Nov 12 07:35:55 2021 -0800
updated doc for metabat common name fix

diff --git src/hg/makeDb/doc/myoLuc2.txt src/hg/makeDb/doc/myoLuc2.txt
index 4ac6837..1db36f7 100644
--- src/hg/makeDb/doc/myoLuc2.txt
+++ src/hg/makeDb/doc/myoLuc2.txt
@@ -1,20 +1,22 @@
 # for emacs: -*- mode: sh; -*-
 
 
 # Myotis lucifugus (microbat) --  Broad Institute of MIT and Harvard
 
+# NOTE: "microbat" is not the ncorrect common name, it is "Little brown bat"
+
 #	http://www.ncbi.nlm.nih.gov/genome/614
 #	http://www.ncbi.nlm.nih.gov/bioproject/16951
 #	http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABVD00
 #	2.18X WGS
 
 # file template copied from susScr2.txt
 
 
 #  Myotis lucifugus
 # (NCBI Project ID: 16951, Accession: GCA_000005525.1)
 #   by Broad Institute of MIT and Harvard
 # ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Myotis_lucifugus/Myoluc2.0/
 
 ##########################################################################
 # Download sequence (DONE - 2010-10-22 - Chin)
@@ -665,28 +667,32 @@
     # real    16m15.818s
 
     # run 'para time > run.time' on ku, then continuing:
     time doGenscan.pl -continue=makeBed myoLuc2 > makeBed.log 2>&1
     #  real    6m23.659s
 
     cat fb.myoLuc2.genscan.txt
     #   65374897 bases of 1966419868 (3.325%) in intersection
 
     cat fb.myoLuc2.genscanSubopt.txt
     #   62128533 bases of 1966419868 (3.159%) in intersection
 
 #########################################################################
 ##############################################################################
 # TransMap V3 tracks. see makeDb/doc/transMapTracks.txt (2014-12-21 markd)
+
 ##############################################################################
 Changing name of organism: (DONE - Hiram - 2021-11-11)
+# It was discovered that "microbat" is not is a common name, but a suborder
+# of Microchiroptera consisting of ~1000 bat species.  The correct 
+# common name for Myotis lucifugus is "Little brown bat"
+
 
 hgsql -e 'update dbDb set organism="Little brown bat" where name="myoLuc2";' hgcentraltest
 
 hgsql -e 'update dbDb set genome="Little brown bat" where name="myoLuc2";' hgcentraltest
 
 hgsql -e 'update genomeClade set genome="Little brown bat" where genome="Microbat";' hgcentraltest
 
 hgsql -e 'update defaultDb set genome="Little brown bat" where name="myoLuc2";' hgcentraltest
 
-
-##############################################################################
+#########################################################################