e18510fd8cce5a41aac912da2ca49fa910e2bc5f markd Fri Nov 12 07:35:55 2021 -0800 updated doc for metabat common name fix diff --git src/hg/makeDb/trackDb/human/newChainNet.ra src/hg/makeDb/trackDb/human/newChainNet.ra index 821239e..8b44b87 100644 --- src/hg/makeDb/trackDb/human/newChainNet.ra +++ src/hg/makeDb/trackDb/human/newChainNet.ra @@ -1,1002 +1,1002 @@ track newChainNet compositeTrack on shortLabel New Chain/Net longLabel New Genomes, Chain and Net Alignments, need better packaging subGroup1 view Views chain=Chains net=Nets subGroup3 clade Clade aaprimate=Primate abrodent=Rodent acmammal=Mammal advertebrate=Vertebrate -subGroup2 species Species aaGreen_monkey=Green_monkey abHuman=Human acHuman=Human adTarsier=Tarsier aeChinese_tree_shrew=Chinese_tree_shrew afChinchilla=Chinchilla agLesser_Egyptian_jerboa=Lesser_Egyptian_jerboa ahGolden_hamster=Golden_hamster aiPrairie_vole=Prairie_vole ajBrush-tailed_rat=Brush-tailed_rat akCow=Cow alBactrian_camel=Bactrian_camel amDomestic_goat=Domestic_goat anCape_golden_mole=Cape_golden_mole aoStar-nosed_mole=Star-nosed_mole apArmadillo=Armadillo aqCape_elephant_shrew=Cape_elephant_shrew arBig_brown_bat=Big_brown_bat asHedgehog=Hedgehog atWeddell_seal=Weddell_seal auYangtze_river_dolphin=Yangtze_river_dolphin avWallaby=Wallaby awFerret_=Ferret_ axDavid_s_myotis_bat_=David_s_myotis_bat_ ayMicrobat=Microbat azPacific_walrus=Pacific_walrus baKiller_whale=Killer_whale bbAardvark=Aardvark bcTibetan_antelope=Tibetan_antelope bdAmur_tiger=Amur_tiger beSperm_whale=Sperm_whale bfBlack_flying-fox=Black_flying-fox bgShrew=Shrew bhManatee=Manatee biChinese_alligator=Chinese_alligator bjParrot=Parrot bkMallard_duck=Mallard_duck blSpiny_softshell_turtle=Spiny_softshell_turtle bmScarlet_macaw=Scarlet_macaw bnMexican_tetra_cavefish_=Mexican_tetra_cavefish_ boGreen_seaturtle=Green_seaturtle bpPainted_turtle=Painted_turtle bqRock_pigeon=Rock_pigeon brSaker_falcon=Saker_falcon bsPeregrine_falcon=Peregrine_falcon btCollared_flycatcher=Collared_flycatcher buBurton_s_mouthbreeder=Burton_s_mouthbreeder bvSpotted_gar=Spotted_gar bwZebra_mbuna=Zebra_mbuna bxPrincess_of_Burundi=Princess_of_Burundi byChinese_softshell_turtle=Chinese_softshell_turtle bzTibetan_ground_jay=Tibetan_ground_jay caPundamilia_nyererei=Pundamilia_nyererei cbZebra_finch=Zebra_finch ccYellowbelly_pufferfish=Yellowbelly_pufferfish cdX_tropicalis=X_tropicalis ceX_tropicalis=X_tropicalis cfSouthern_platyfish=Southern_platyfish cgWhite-throated_sparrow=White-throated_sparrow +subGroup2 species Species aaGreen_monkey=Green_monkey abHuman=Human acHuman=Human adTarsier=Tarsier aeChinese_tree_shrew=Chinese_tree_shrew afChinchilla=Chinchilla agLesser_Egyptian_jerboa=Lesser_Egyptian_jerboa ahGolden_hamster=Golden_hamster aiPrairie_vole=Prairie_vole ajBrush-tailed_rat=Brush-tailed_rat akCow=Cow alBactrian_camel=Bactrian_camel amDomestic_goat=Domestic_goat anCape_golden_mole=Cape_golden_mole aoStar-nosed_mole=Star-nosed_mole apArmadillo=Armadillo aqCape_elephant_shrew=Cape_elephant_shrew arBig_brown_bat=Big_brown_bat asHedgehog=Hedgehog atWeddell_seal=Weddell_seal auYangtze_river_dolphin=Yangtze_river_dolphin avWallaby=Wallaby awFerret_=Ferret_ axDavid_s_myotis_bat_=David_s_myotis_bat_ ayMicrobat=Little_brown_bat azPacific_walrus=Pacific_walrus baKiller_whale=Killer_whale bbAardvark=Aardvark bcTibetan_antelope=Tibetan_antelope bdAmur_tiger=Amur_tiger beSperm_whale=Sperm_whale bfBlack_flying-fox=Black_flying-fox bgShrew=Shrew bhManatee=Manatee biChinese_alligator=Chinese_alligator bjParrot=Parrot bkMallard_duck=Mallard_duck blSpiny_softshell_turtle=Spiny_softshell_turtle bmScarlet_macaw=Scarlet_macaw bnMexican_tetra_cavefish_=Mexican_tetra_cavefish_ boGreen_seaturtle=Green_seaturtle bpPainted_turtle=Painted_turtle bqRock_pigeon=Rock_pigeon brSaker_falcon=Saker_falcon bsPeregrine_falcon=Peregrine_falcon btCollared_flycatcher=Collared_flycatcher buBurton_s_mouthbreeder=Burton_s_mouthbreeder bvSpotted_gar=Spotted_gar bwZebra_mbuna=Zebra_mbuna bxPrincess_of_Burundi=Princess_of_Burundi byChinese_softshell_turtle=Chinese_softshell_turtle bzTibetan_ground_jay=Tibetan_ground_jay caPundamilia_nyererei=Pundamilia_nyererei cbZebra_finch=Zebra_finch ccYellowbelly_pufferfish=Yellowbelly_pufferfish cdX_tropicalis=X_tropicalis ceX_tropicalis=X_tropicalis cfSouthern_platyfish=Southern_platyfish cgWhite-throated_sparrow=White-throated_sparrow dragAndDrop subTracks visibility hide priority 103 group compGeno noInherit on color 0,0,0 altColor 255,255,0 type bed 3 chainLinearGap medium chainMinScore 5000 dimensions dimensionX=clade dimensionY=species sortOrder species=+ view=+ clade=+ configurable on html newChainNet track primateNewChainNetViewchain shortLabel Chains view chain visibility pack subTrack newChainNet spectrum on track chainChlSab1 subTrack primateNewChainNetViewchain on subGroups view=chain species=aaGreen_monkey clade=aaprimate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chlSab1 otherDb chlSab1 track chainHg19 subTrack primateNewChainNetViewchain on subGroups view=chain species=abHuman clade=aaprimate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain hg19 otherDb hg19 track chainHg38 subTrack primateNewChainNetViewchain on subGroups view=chain species=acHuman clade=aaprimate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain hg38 otherDb hg38 # track chainTarSyr1 # subTrack primateNewChainNetViewchain on # subGroups view=chain species=adTarsier clade=aaprimate # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain tarSyr1 # otherDb tarSyr1 track chainTupChi1 subTrack primateNewChainNetViewchain on subGroups view=chain species=aeChinese_tree_shrew clade=aaprimate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain tupChi1 otherDb tupChi1 track rodentNewChainNetViewchain shortLabel Chains view chain visibility pack subTrack newChainNet spectrum on track chainChiLan1 subTrack rodentNewChainNetViewchain on subGroups view=chain species=afChinchilla clade=abrodent shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chiLan1 otherDb chiLan1 track chainJacJac1 subTrack rodentNewChainNetViewchain on subGroups view=chain species=agLesser_Egyptian_jerboa clade=abrodent shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain jacJac1 otherDb jacJac1 track chainMesAur1 subTrack rodentNewChainNetViewchain on subGroups view=chain species=ahGolden_hamster clade=abrodent shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain mesAur1 otherDb mesAur1 track chainMicOch1 subTrack rodentNewChainNetViewchain on subGroups view=chain species=aiPrairie_vole clade=abrodent shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain micOch1 otherDb micOch1 track chainOctDeg1 subTrack rodentNewChainNetViewchain on subGroups view=chain species=ajBrush-tailed_rat clade=abrodent shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain octDeg1 otherDb octDeg1 track mammalNewChainNetViewchain shortLabel Chains view chain visibility pack subTrack newChainNet spectrum on # track chainBosTau7 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=akCow clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain bosTau7 # otherDb bosTau7 # track chainCamFer1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=alBactrian_camel clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain camFer1 # otherDb camFer1 # track chainCapHir1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=amDomestic_goat clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain capHir1 # otherDb capHir1 # track chainChrAsi1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=anCape_golden_mole clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain chrAsi1 # otherDb chrAsi1 # track chainConCri1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=aoStar-nosed_mole clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain conCri1 # otherDb conCri1 # track chainDasNov3 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=apArmadillo clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain dasNov3 # otherDb dasNov3 # track chainEleEdw1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=aqCape_elephant_shrew clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain eleEdw1 # otherDb eleEdw1 # track chainEptFus1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=arBig_brown_bat clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain eptFus1 # otherDb eptFus1 # track chainEriEur1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=asHedgehog clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain eriEur1 # otherDb eriEur1 # track chainLepWed1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=atWeddell_seal clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain lepWed1 # otherDb lepWed1 # track chainLipVex1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=auYangtze_river_dolphin clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain lipVex1 # otherDb lipVex1 track chainMacEug2 subTrack mammalNewChainNetViewchain on subGroups view=chain species=avWallaby clade=acmammal shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain macEug2 otherDb macEug2 # track chainMusFur1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=awFerret_ clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain musFur1 # otherDb musFur1 # track chainMyoDav1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=axDavid_s_myotis_bat_ clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain myoDav1 # otherDb myoDav1 # track chainMyoLuc2 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=ayMicrobat clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain myoLuc2 # otherDb myoLuc2 # track chainOdoRosDiv1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=azPacific_walrus clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain odoRosDiv1 # otherDb odoRosDiv1 # track chainOrcOrc1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=baKiller_whale clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain orcOrc1 # otherDb orcOrc1 # track chainOryAfe1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=bbAardvark clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain oryAfe1 # otherDb oryAfe1 # track chainPanHod1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=bcTibetan_antelope clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain panHod1 # otherDb panHod1 # track chainPanTig1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=bdAmur_tiger clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain panTig1 # otherDb panTig1 # track chainPhyCat1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=beSperm_whale clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain phyCat1 # otherDb phyCat1 # track chainPteAle1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=bfBlack_flying-fox clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain pteAle1 # otherDb pteAle1 # track chainSorAra1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=bgShrew clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain sorAra1 # otherDb sorAra1 # track chainTriMan1 # subTrack mammalNewChainNetViewchain on # subGroups view=chain species=bhManatee clade=acmammal # shortLabel $o_Organism Chain # longLabel $o_Organism ($o_date) Chained Alignments # type chain triMan1 # otherDb triMan1 track vertebrateNewChainNetViewchain shortLabel Chains view chain visibility pack subTrack newChainNet spectrum on track chainAllSin1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=biChinese_alligator clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain allSin1 otherDb allSin1 track chainAmaVit1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bjParrot clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain amaVit1 otherDb amaVit1 track chainAnaPla1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bkMallard_duck clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain anaPla1 otherDb anaPla1 track chainApaSpi1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=blSpiny_softshell_turtle clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain apaSpi1 otherDb apaSpi1 track chainAraMac1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bmScarlet_macaw clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain araMac1 otherDb araMac1 track chainAstMex1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bnMexican_tetra_cavefish_ clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain astMex1 otherDb astMex1 track chainCheMyd1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=boGreen_seaturtle clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain cheMyd1 otherDb cheMyd1 track chainChrPic1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bpPainted_turtle clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chrPic1 otherDb chrPic1 track chainColLiv1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bqRock_pigeon clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain colLiv1 otherDb colLiv1 track chainFalChe1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=brSaker_falcon clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain falChe1 otherDb falChe1 track chainFalPer1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bsPeregrine_falcon clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain falPer1 otherDb falPer1 track chainFicAlb2 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=btCollared_flycatcher clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ficAlb2 otherDb ficAlb2 track chainHapBur1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=buBurton_s_mouthbreeder clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain hapBur1 otherDb hapBur1 track chainLepOcu1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bvSpotted_gar clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain lepOcu1 otherDb lepOcu1 track chainMayZeb1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bwZebra_mbuna clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain mayZeb1 otherDb mayZeb1 track chainNeoBri1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bxPrincess_of_Burundi clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain neoBri1 otherDb neoBri1 track chainPelSin1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=byChinese_softshell_turtle clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain pelSin1 otherDb pelSin1 track chainPseHum1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=bzTibetan_ground_jay clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain pseHum1 otherDb pseHum1 track chainPunNye1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=caPundamilia_nyererei clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain punNye1 otherDb punNye1 track chainTaeGut1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=cbZebra_finch clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain taeGut1 otherDb taeGut1 track chainTakFla1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=ccYellowbelly_pufferfish clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain takFla1 otherDb takFla1 track chainXenTro1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=cdX_tropicalis clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro1 otherDb xenTro1 track chainXipMac1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=cfSouthern_platyfish clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xipMac1 otherDb xipMac1 track chainZonAlb1 subTrack vertebrateNewChainNetViewchain on subGroups view=chain species=cgWhite-throated_sparrow clade=advertebrate shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain zonAlb1 otherDb zonAlb1 track primateNewChainNetViewnet shortLabel Nets view net visibility dense subTrack newChainNet track netChlSab1 subTrack primateNewChainNetViewnet on subGroups view=net species=aaGreen_monkey clade=aaprimate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chlSab1 chainChlSab1 otherDb chlSab1 track netHg19 subTrack primateNewChainNetViewnet on subGroups view=net species=abHuman clade=aaprimate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign hg19 chainHg19 otherDb hg19 track netHg38 subTrack primateNewChainNetViewnet on subGroups view=net species=acHuman clade=aaprimate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign hg38 chainHg38 otherDb hg38 # track netTarSyr1 # subTrack primateNewChainNetViewnet on # subGroups view=net species=adTarsier clade=aaprimate # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign tarSyr1 chainTarSyr1 # otherDb tarSyr1 track netTupChi1 subTrack primateNewChainNetViewnet on subGroups view=net species=aeChinese_tree_shrew clade=aaprimate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign tupChi1 chainTupChi1 otherDb tupChi1 track rodentNewChainNetViewnet shortLabel Nets view net visibility dense subTrack newChainNet track netChiLan1 subTrack rodentNewChainNetViewnet on subGroups view=net species=afChinchilla clade=abrodent shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chiLan1 chainChiLan1 otherDb chiLan1 track netJacJac1 subTrack rodentNewChainNetViewnet on subGroups view=net species=agLesser_Egyptian_jerboa clade=abrodent shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign jacJac1 chainJacJac1 otherDb jacJac1 track netMesAur1 subTrack rodentNewChainNetViewnet on subGroups view=net species=ahGolden_hamster clade=abrodent shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign mesAur1 chainMesAur1 otherDb mesAur1 track netMicOch1 subTrack rodentNewChainNetViewnet on subGroups view=net species=aiPrairie_vole clade=abrodent shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign micOch1 chainMicOch1 otherDb micOch1 track netOctDeg1 subTrack rodentNewChainNetViewnet on subGroups view=net species=ajBrush-tailed_rat clade=abrodent shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign octDeg1 chainOctDeg1 otherDb octDeg1 track mammalNewChainNetViewnet shortLabel Nets view net visibility dense subTrack newChainNet # track netBosTau7 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=akCow clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign bosTau7 chainBosTau7 # otherDb bosTau7 # track netCamFer1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=alBactrian_camel clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign camFer1 chainCamFer1 # otherDb camFer1 # track netCapHir1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=amDomestic_goat clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign capHir1 chainCapHir1 # otherDb capHir1 # track netChrAsi1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=anCape_golden_mole clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign chrAsi1 chainChrAsi1 # otherDb chrAsi1 # track netConCri1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=aoStar-nosed_mole clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign conCri1 chainConCri1 # otherDb conCri1 # track netDasNov3 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=apArmadillo clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign dasNov3 chainDasNov3 # otherDb dasNov3 # track netEleEdw1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=aqCape_elephant_shrew clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign eleEdw1 chainEleEdw1 # otherDb eleEdw1 # track netEptFus1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=arBig_brown_bat clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign eptFus1 chainEptFus1 # otherDb eptFus1 # track netEriEur1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=asHedgehog clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign eriEur1 chainEriEur1 # otherDb eriEur1 # track netLepWed1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=atWeddell_seal clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign lepWed1 chainLepWed1 # otherDb lepWed1 # track netLipVex1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=auYangtze_river_dolphin clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign lipVex1 chainLipVex1 # otherDb lipVex1 track netMacEug2 subTrack mammalNewChainNetViewnet on subGroups view=net species=avWallaby clade=acmammal shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign macEug2 chainMacEug2 otherDb macEug2 # track netMusFur1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=awFerret_ clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign musFur1 chainMusFur1 # otherDb musFur1 # track netMyoDav1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=axDavid_s_myotis_bat_ clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign myoDav1 chainMyoDav1 # otherDb myoDav1 # track netMyoLuc2 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=ayMicrobat clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign myoLuc2 chainMyoLuc2 # otherDb myoLuc2 # track netOdoRosDiv1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=azPacific_walrus clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign odoRosDiv1 chainOdoRosDiv1 # otherDb odoRosDiv1 # track netOrcOrc1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=baKiller_whale clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign orcOrc1 chainOrcOrc1 # otherDb orcOrc1 # track netOryAfe1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=bbAardvark clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign oryAfe1 chainOryAfe1 # otherDb oryAfe1 # track netPanHod1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=bcTibetan_antelope clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign panHod1 chainPanHod1 # otherDb panHod1 # track netPanTig1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=bdAmur_tiger clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign panTig1 chainPanTig1 # otherDb panTig1 # track netPhyCat1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=beSperm_whale clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign phyCat1 chainPhyCat1 # otherDb phyCat1 # track netPteAle1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=bfBlack_flying-fox clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign pteAle1 chainPteAle1 # otherDb pteAle1 # track netSorAra1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=bgShrew clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign sorAra1 chainSorAra1 # otherDb sorAra1 # track netTriMan1 # subTrack mammalNewChainNetViewnet on # subGroups view=net species=bhManatee clade=acmammal # shortLabel $o_Organism Net # longLabel $o_Organism ($o_date) Alignment Net # type netAlign triMan1 chainTriMan1 # otherDb triMan1 track vertebrateNewChainNetViewnet shortLabel Nets view net visibility dense subTrack newChainNet track netAllSin1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=biChinese_alligator clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign allSin1 chainAllSin1 otherDb allSin1 track netAmaVit1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bjParrot clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign amaVit1 chainAmaVit1 otherDb amaVit1 track netAnaPla1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bkMallard_duck clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign anaPla1 chainAnaPla1 otherDb anaPla1 track netApaSpi1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=blSpiny_softshell_turtle clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign apaSpi1 chainApaSpi1 otherDb apaSpi1 track netAraMac1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bmScarlet_macaw clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign araMac1 chainAraMac1 otherDb araMac1 track netAstMex1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bnMexican_tetra_cavefish_ clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign astMex1 chainAstMex1 otherDb astMex1 track netCheMyd1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=boGreen_seaturtle clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign cheMyd1 chainCheMyd1 otherDb cheMyd1 track netChrPic1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bpPainted_turtle clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chrPic1 chainChrPic1 otherDb chrPic1 track netColLiv1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bqRock_pigeon clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign colLiv1 chainColLiv1 otherDb colLiv1 track netFalChe1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=brSaker_falcon clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign falChe1 chainFalChe1 otherDb falChe1 track netFalPer1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bsPeregrine_falcon clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign falPer1 chainFalPer1 otherDb falPer1 track netFicAlb2 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=btCollared_flycatcher clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ficAlb2 chainFicAlb2 otherDb ficAlb2 track netHapBur1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=buBurton_s_mouthbreeder clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign hapBur1 chainHapBur1 otherDb hapBur1 track netLepOcu1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bvSpotted_gar clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign lepOcu1 chainLepOcu1 otherDb lepOcu1 track netMayZeb1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bwZebra_mbuna clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign mayZeb1 chainMayZeb1 otherDb mayZeb1 track netNeoBri1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bxPrincess_of_Burundi clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign neoBri1 chainNeoBri1 otherDb neoBri1 track netPelSin1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=byChinese_softshell_turtle clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign pelSin1 chainPelSin1 otherDb pelSin1 track netPseHum1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=bzTibetan_ground_jay clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign pseHum1 chainPseHum1 otherDb pseHum1 track netPunNye1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=caPundamilia_nyererei clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign punNye1 chainPunNye1 otherDb punNye1 track netTaeGut1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=cbZebra_finch clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign taeGut1 chainTaeGut1 otherDb taeGut1 track netTakFla1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=ccYellowbelly_pufferfish clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign takFla1 chainTakFla1 otherDb takFla1 track netXenTro1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=cdX_tropicalis clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro1 chainXenTro1 otherDb xenTro1 track netXipMac1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=cfSouthern_platyfish clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xipMac1 chainXipMac1 otherDb xipMac1 track netZonAlb1 subTrack vertebrateNewChainNetViewnet on subGroups view=net species=cgWhite-throated_sparrow clade=advertebrate shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign zonAlb1 chainZonAlb1 otherDb zonAlb1