e941a68c6f3089528741d24330b8ef04999a47fe markd Sun Nov 14 15:03:29 2021 -0800 added option to output TSV-style header diff --git src/hg/pslStats/tests/makefile src/hg/pslStats/tests/makefile index 70aad08..d925269 100644 --- src/hg/pslStats/tests/makefile +++ src/hg/pslStats/tests/makefile @@ -1,53 +1,59 @@ kentSrc = ../../.. include ../../../inc/common.mk pslStats = ${DESTBINDIR}/pslStats test: untransAlignTest untransQueryTest untransOverallTest \ untransAlignUnalnTest untransQueryUnalnTest untransOverallUnalnTest \ - cdna2cdnaAlignTest cdna2cdnaQueryTest cdna2cdnaOverallTest + cdna2cdnaAlignTest cdna2cdnaQueryTest cdna2cdnaOverallTest \ + tsvHeaderTest # basic set of tests with an untranslated psl untransAlignTest: mkdirs ${pslStats} input/basic.psl output/$@.stats diff -u expected/$@.stats output/$@.stats untransQueryTest: mkdirs ${pslStats} -queryStats input/basic.psl output/$@.stats diff -u expected/$@.stats output/$@.stats untransOverallTest: mkdirs ${pslStats} -overallStats input/basic.psl output/$@.stats diff -u expected/$@.stats output/$@.stats # tests with list which has unaligned sequences untransAlignUnalnTest: mkdirs ${pslStats} -queries=input/basic.queries input/basic.psl output/$@.stats diff -u expected/$@.stats output/$@.stats untransQueryUnalnTest: mkdirs ${pslStats} -queryStats -queries=input/basic.queries input/basic.psl output/$@.stats diff -u expected/$@.stats output/$@.stats untransOverallUnalnTest: mkdirs ${pslStats} -overallStats -queries=input/basic.queries input/basic.psl output/$@.stats diff -u expected/$@.stats output/$@.stats # cDNA to cDNA alignments, will have tCover that is interesting cdna2cdnaAlignTest: mkdirs ${pslStats} -queries=input/cdna2cdna.queries input/cdna2cdna.psl output/$@.stats diff -u expected/$@.stats output/$@.stats cdna2cdnaQueryTest: mkdirs ${pslStats} -queryStats -queries=input/cdna2cdna.queries input/cdna2cdna.psl output/$@.stats diff -u expected/$@.stats output/$@.stats cdna2cdnaOverallTest: mkdirs ${pslStats} -overallStats -queries=input/cdna2cdna.queries input/cdna2cdna.psl output/$@.stats diff -u expected/$@.stats output/$@.stats +tsvHeaderTest: mkdirs + ${pslStats} -tsv input/basic.psl output/$@.stats + diff -u expected/$@.stats output/$@.stats + + clean:: rm -rf output mkdirs: @${MKDIR} output