7787c0ece98e4377fef9ef76f6873d954d8d7ea8 angie Fri Nov 12 13:34:42 2021 -0800 Added lineage B.1.640 (pango-designation release v1.2.94). diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index 34e2181..6b30146 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -197,16 +197,17 @@ P.1.17.1 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296G > C28603T > C346T > T11288A,G11291A > A6704G > G19999T > C21707T P.2 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > C29754T > G23012A > C100T > G28975T > T10667G > C11824T > G28628T P.3 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > A22356N,C29724T > C23604A > T9867C > A4926G,C7564A,C11308A,T24187A,A27897C > T23341C > C12049T,C12053T,G23012A,A23063T > G24836A,C24863T > C17339T > C17074T P.4 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > G1811A > C3177T,C11450A,C12880T > A136G,C9693T,T9867C,C12008T,A15932G,G18756T,T20745C,G21987N,T22917G,A23720G,G25540A,C25708T,A28271C,C28932T P.5 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C24904T > G25906T > G5180A,G9929A,C21846T > G23012C,A23064C,G24410N,C27807T,A28271T,C28311T P.6 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > G21305A > G2534T > C1077T,C3736T,C7043T,C10029T,A14113G,C24382T > G23587C,C25665T > C8980T,G23593T P.7 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > C17676T > C17172T,C25844T,C28311T C.37 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A > G28913T C.37.1 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A > G28913T > C29311T > C26894T > T11296G > A28877T > G28878C > C20806T B.1.621 C14408T > C241T > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T,G24410N > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T B.1.621.1 C14408T > C241T > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T,G24410N > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T > C17707T > C5192T > A6704G,T22384A > C9120T > C20402T > T29748C > C28657T > G26167T B.1.160 C14408T > C241T > C3037T > A23403G > G25563T > C26735T > C18877T > G28975C > T26876C > G29399A > C25710T > G9526T,G22992A > G5629T > C11497T B.1.1.315 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > C29466T > C22388T,C26060T,A29771G > T3256C,C19718T > A1163T,G19542T B.1.1.232 C14408T > C241T > C3037T > A23403G > G28881A > G28883C > G28882A > C6573T > G12191T > T16479C > T2537G B.1.639 C14408T > C241T > C3037T > A23403G > G23012A > A28271G > T22020C,C22995A,C24138A,G24368T,T27919C,A28742G +B.1.640 C14408T > C241T > C3037T > A23403G > G25563T > C28005N,C28093N > C27925N > A23063T,C23604A > C10029T,C28887T > A26492T > C601T,C1191T,A1620G,C2416T,C2455T,G6622T,G7328T,C9711T,G9756A,T11418C,C11956T,C16575T,C16869T,C20283T,C21588T,G21848C,G22132T,T22191C,A22600C,A22743G,T22907A,T23030C,T23031N,C24138A,G24368C,C25487T,T26767C,C27513T,C27807T,T29377C,G29405C,G29465N AA.1 C14408T > C241T > C3037T > A23403G > C6286T > C28932T > C22227T > G29645T > T445C > G21255C > C26801G > C5170T > G11132T > G22051T > C10078T > G11417T