2c8115414f9f247308f4d43fe71d2ff92b156c15
hiram
  Wed Nov 17 10:31:46 2021 -0800
correct name on bash script refs #28401

diff --git src/hg/utils/automation/doCpgIslands.pl src/hg/utils/automation/doCpgIslands.pl
index c573ff1..b4c24d6 100755
--- src/hg/utils/automation/doCpgIslands.pl
+++ src/hg/utils/automation/doCpgIslands.pl
@@ -161,31 +161,31 @@
 sub doMakeBed {
   my $runDir = $buildDir;
   &HgAutomate::mustMkdir($runDir);
 
   # First, make sure we're starting clean.
   if (-e "$runDir/cpgIsland.bed") {
     die "doMakeBed: looks like this was run successfully already " .
       "(cpgIsland.bed exists).  Either run with -continue load or cleanup " .
 	"or move aside/remove $runDir/cpgIsland.bed and run again.\n";
   }
   if (! -e "$runDir/cpglh.result") {
     die "doMakeBed: previous step doCpg has not completed, cpglh.result not found\n";
   }
 
   my $whatItDoes = "Makes bed from cpglh output.";
-  my $bossScript = newBash HgRemoteScript("$runDir/doMakeBed.bcsh", $workhorse,
+  my $bossScript = newBash HgRemoteScript("$runDir/doMakeBed.bash", $workhorse,
 				      $runDir, $whatItDoes);
 
   $bossScript->add(<<_EOF_
 awk \'\{\$2 = \$2 - 1; width = \$3 - \$2;  printf\(\"\%s\\t\%d\\t\%s\\t\%s \%s\\t\%s\\t\%s\\t\%0.0f\\t\%0.1f\\t\%s\\t\%s\\n\", \$1, \$2, \$3, \$5, \$6, width, \$6, width\*\$7\*0.01, 100.0\*2\*\$6\/width, \$7, \$9\);}\' cpglh.result \\
      | sort -k1,1 -k2,2n > cpgIsland.bed
 bedToBigBed -tab -type=bed4+6 -as=\$HOME/kent/src/hg/lib/cpgIslandExt.as \\
   cpgIsland.bed $chromSizes $db.$tableName.bb
 _EOF_
   );
   $bossScript->execute();
 } # doMakeBed
 
 #########################################################################
 # * step: load [dbHost]
 sub doLoadCpg {