71bc760d1659f6d6f77ee7ab37f3b1da25d39f93 angie Tue Jan 4 20:00:48 2022 -0800 Added AY.132 - pango-designation v1.2.119 diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index 60182b8..9c62a98 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -40,30 +40,31 @@ AY.122.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G1048T > G20937T > C19983T > C23934T AY.122.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461N > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G1048T > C27527T > G13892A > G14772A > G22793T AY.122.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G1048T > C27527T > T17694C > T20838C > C12513T,G17338A,G23401T,C28873A AY.123 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > C15738T > A7519C > G17790T,G27762T AY.123.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > C15738T > A7519C > G17790T,G27762T > C897T > C5730T > C25350T > G20002T AY.124 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > A10323G > C21301A AY.124.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > A10323G > C21301A > C1593T > C13971T > G25720T > C26058T > G25445T,G28628T AY.125 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G15906T > C745T AY.126 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > A21137G AY.127 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25538T AY.127.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25538T > C26054A > G28378T > T7816C,C24138A > G242N > G23608T > A19445G AY.128 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G15906T > T28150C > C2973T,G16795T AY.129 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G28001T > A21194G AY.130 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G17721T > A691G > C1549T,C6040T,C14790T,A19068G,A22305C,C22326T,G25538T AY.131 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G29688N > G22899T > C14407T,T29014C > G19999T > A23064C +AY.132 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C25710T > A2172G > C7945T > G18213A,G27870T > G1418A,C4754T,C23683T,G25855T,C27131T,C27881A > G11161A,T11488C,T19500C,A19908G AY.13 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > A17406G AY.14 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > C19160T > G20718T AY.15 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > C19160T > A16872G,G27382C AY.16 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > T26076A AY.16.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > T26076A > C14913T > C8407T > A12417G,G12911A AY.17 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A25562G > C14708T > A2240G > C17436T AY.18 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > T23470C,C27807T AY.19 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A25562G > G25019T,G25947T AY.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C2509T > G3701A > T3055C > C17336T,C18570T,G22813T AY.20 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G24872T > C2061T AY.20.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G24872T > C2061T > C8880T,G9190T > G29737N > C27393T > C11173T,G25481T AY.21 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G29227T > C18166T > G25647A > G28195T,T28897C,C29167T AY.22 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G24872T > G14209T > G22216T > T12496C,G26062T AY.23 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25352T > C1404T > C4752T AY.23.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25352T > C1404T > C4752T > A7537G,G17679T > C5497T,C12100T > C1263T > A14748G > C25262A