b49e29d1c9fc2d131e44db1f6f3a742367e8626b angie Tue Dec 14 17:50:54 2021 -0800 Add mutations for a few lineages, and tweaking a couple existing ones, to resolve some problems turned up in a comparison between our tree's calls and pango-designation/lineages.csv. diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index a3e8300..e84d1f8 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -199,62 +199,65 @@ AY.99.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C15240T > T13216C > A3536G > C4927T,C12525T B.1.617.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G B.1.351 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > C23664T > A21801C > G5230T,C25904T,C26456T > G22813T > A10323G > C28887T > G174N > A23063T > G23012A B.1.351.2 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > C23664T > A21801C > G5230T,C25904T,C26456T > G22813T > A10323G > C28887T > G174N > A23063T > G23012A > A22206G > A2692T > C21614T > A8052G,G10396T > C10632T B.1.351.3 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > C23664T > A21801C > G5230T,C25904T,C26456T > G22813T > A10323G > C28887T > G174N > A23063T > G23012A > A22206G > A2692T > C21614T > A8052G,G10396T > A16687G > C6402T,T7624C B.1.351.5 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > C23664T > A21801C > G5230T,C25904T,C26456T > G22813T > A10323G > C28887T > G174N > A23063T > G23012A > A22206G > A2692T > C21614T > C26645T > G1463T,C25844T > A29406T > C664T,C19019A > T11296N > G25660A B.1.1.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T Q.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > T11296N > G11291N > C14220T Q.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > T11296N > G21770A > A21766C > G11291N,C21767T > A21768C > G22468T > C6636T > C25626T > A1752G Q.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > A17615G > G26730C > G20962A Q.4 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604N > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > T11296N > A17615G > A12162G > A4964G Q.5 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > T11296N > C2453T > G21974C > T23031C > C15656T,C28677T,C29114A,G29266C Q.6 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > A28095T > T11296N > T15096C > C25096T > C19164T > C29171T Q.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > A28095T > G28884C > T15096C > C5944T > T18018C > A17337G > A7069C Q.8 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T28282A > G28280C,A28281T > A23063T > C15279T > C28977T > A28111G > C913T > C5986T > C23709T > T6954C > C23604A > C23271A > G24914C > T24506G > T16176C > C27972T > C14676T > C3267T > C5388A > G28048T > A28095T > T11296N > T15096C > C25096T > C19164T > G11291N > T11288N > A25974C > C12525T > G29751N -P.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G +P.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T P.1.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > G11291N > T13851C P.1.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > G25641T > C1912T > A2550G,C5724T,G25855T,C28789T P.1.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C5526T > C27942T P.1.4 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > T23599G P.1.5 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > C3117T,A18945G > T23599A P.1.6 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C15714T > C10615T > C23604A P.1.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C23604A P.1.7.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C23604A > T3049C,C10116T P.1.8 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > T592C > C9891T > A4040G > C26039T > A20055G,C22971A,G27915T > C23604G,G25266T P.1.9 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > T592C > C9891T > A4040G > C6040T > C18647T,G23587C P.1.10 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C1427T P.1.10.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > C1427T > C13329T > G11291N,T11296N > C2841T > G4300T > C26873T P.1.10.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > C1427T > C13329T > C20178T > T4033C,C5850T,T29726N P.1.11 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > G11291N > T11288N > C7945T > C23604G P.1.12 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > T3592C P.1.13 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > C1912T > G10610T P.1.14 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > C23380T > G9105A P.1.15 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > G11291N > A2596G > C18129T P.1.16 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > A25746G P.1.17 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C28603T > C346T P.1.17.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C28603T > C346T > T11288N,G11291N > A6704G > G19999T > C21707T P.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > C29754N > G23012A > C100N > G28975T > T10667G > C11824T > G28628T P.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > A22356N,C29724N > C23604A > T9867C > A4926G,C7564A,C11308A,T24187A,A27897C > T23341C > C12049T,C12053T,G23012A,A23063T > G24836A,C24863T > C17339T > C17074T P.4 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > G1811A > C3177T,C11450A,C12880T > A136N,C9693T,T9867C,C12008T,A15932G,G18756T,T20745C,G21987N,T22917G,A23720G,G25540A,C25708T,A28271C,C28932T P.5 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C24904T > G25906T > G5180A,G9929A,C21846T > G23012C,A23064C,C27807T,A28271T,C28311T P.6 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > G21305A > G2534T > C1077T,C3736T,C7043T,C10029T,A14113G,C24382T > G23587C,C25665T > C8980T,G23593T P.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > C17676T > C17172T,C25844T,C28311T -C.37 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A > G28913T +C.37 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A C.37.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A > G28913T > C29311T > C26894T > T11296N > A28877T > G28878C > C20806T B.1.621 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T B.1.621.1 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T > C17707T > C5192T > A6704G,T22384A > C9120T > C20402T > T29748N > C28657T > G26167T B.1.160 C14408T > C241N > C3037T > A23403G > G25563T > C26735T > C18877T > G28975C > T26876C > G29399A > C25710T > G9526T,G22992A > G5629T > C11497T B.1.1.315 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C29466T > C22388T,C26060T,A29771N > T3256C,C19718T > A1163T,G19542T B.1.1.232 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C6573T > G12191T > T16479C > T2537G B.1.1.529 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > G23012N > A23063T > T22882G,C22995A,A23013C,C23525T,C24130N > A18163N,C21762N,A24424N,T24469N,C25584N,T22673N,G22898N,C23202N > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T BA.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G BA.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T,C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C BA.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C26270T,C26577G,G26709A,A28271T,C28311T > C21762T,G22898A > T670G,G4184A,C4321T,C9534T,G10447A,C12880T,C15714T,G22775A,C26060T,C26858T,A29510C > C832T,C11235T B.1.637 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > G28975A > C25517T > A20262G > T9867C > C27925T > C9891T > A9749G > T22917G > A21801G,T22032C > C28887T > G11804A B.1.637.1 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > G28975A > C25517T > A20262N > T9867C > C27925T > C9891T > A9749G > T22917G > A21801G,T22032C > C28887T > G11804A > C25413T,C25703T > G28044T > C24138A > C5581T > T7249C,C16575T > T6345C > C556T,G25437C > G370T,T606C,C4449T,C10029T,A13535G,C22353T,G22898C,C22995G,C23604G,C25904T,T26767C,C28311T B.1.639 C14408T > C241N > C3037T > A23403G > G23012A > A28271G > T22020C,C22995A,C24138A,G24368T,T27919C,A28742G B.1.640 C14408T > C241N > C3037T > A23403G > G25563T > C28005N,C28093N > C27925N > A23063T,C23604A > C10029N,C28887T > G23012N > A26492N > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,T26767N,C27513T,C27807T,T29377C B.1.640.1 C14408T > C241N > C3037T > A23403G > G25563T > C28005T,C28093T > C27925A > A23063T,C23604A > C10029T,C28887T > A26492T > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,T26767C,C27513T,C27807T,T29377C > C601T,A1620G,G6622T,G7328T,C9711T,G9756A,T11418C,C16575T,C20283T,T22191C,T23030C,G24368C,G29405C B.1.640.2 C14408T > C241N > C3037T > A23403G > G25563T > A23063T,C23604A > C28887T > G23012A > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,C27513T,C27807T,T29377C > G9929A,T10561C,C11514T,C17004T,T17348C,A17916G,C18175T,C18804T,G19348T,T19680C,A21258G,G22205C,T23031C,G24977C,T26767G,T27833C,C27972T,T28002C,C28312T,G28337T,G29779N AA.1 C14408T > C241N > C3037T > A23403G > C6286T > C28932T > C22227T > G29645N > T445C > G21255C > C26801G > C5170T > G11132T > G22051T > C10078T > G11417T +AV.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > G23012A > C9891T > C313T,T772C,G1820A,C2037T,C3743T,C5184T,A7479G,T11288A,G11291N,T11296N,T11503C,T14740G,C18395T,A21801G,T21992G,A21993T,C22687T,C22879G,A24950G,G24977C,T26159G,A26161T,G26709A,C27297T,A28742G,C28744T +A.23.1 T28144C > C8782T > G28878A > G29742N > G11230T > G28167A > G11266T,C22000T > C22033A,G23401T,T24097C > C4573T,C16575T,C23604G +B.1.429 C14408T > C241T > C3037T > A23403G > G25563T > C1059T > C28887T > A28272T > C29362T > T22917G > C26681T > G17014T > G22018T > G21600T XC C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T22917G,C22995A > C7124T,G15451A,C16466T > C6402T > C21618G,C25469T > C23604G > C8986T,G9053T > C19220T,G28280C,A28281T,T28282A,C28977T > G4181T,C21846T,C27972T,G28048T,A28111G > G210N,C10029T,A11201G,A11332G,T26767C > C5239T,T5514C,G22081T,G27390T