21f0ab2df4174e7897add1f68b87226954fd0945 gperez2 Wed Dec 29 09:30:16 2021 -0800 Added some identifiers to the Sample queries list, refs #28588 diff --git src/hg/htdocs/goldenPath/help/query.html src/hg/htdocs/goldenPath/help/query.html index da7157f..7887cee 100755 --- src/hg/htdocs/goldenPath/help/query.html +++ src/hg/htdocs/goldenPath/help/query.html @@ -132,30 +132,54 @@ ENSP00000005178.5:p.Val20Gly<br> chrX:g.31500000_31600000del<br> NR_111987:n.-1 <br> NM_015102.5:n.3038-2<br> NM_001372044:c.1528_1530del</td> <td>Displays the region containing <a href="http://varnomen.hgvs.org/" target="_blank">HGVS</a> term</td></tr> <!-- commented out -- not working <tr> <td>15q11;15q13</td> <td>bands 15q11 to 15q13, or SNPs rs1042522 and rs1800370. This syntax may also be used for other range queries</td></tr> <tr> <td>rs1042522;rs1800370</td> <td>such as between uniquely determined ESTs, mRNAs, refSeqs, etc.</td></tr> --> <tr> + <td>essv8694097</td> + <td>Displays the region containing Database of Genomic Variants (DGV)</td></tr> + <tr> + <td>nssv3446126</td> + <td>Displays the region containing copy number variation from cases of developmental delay</td></tr> + <tr> + <td>CTD-3071L10</td> + <td>Displays the region containing NCBI clone end mappings from the NCBI Clone DB database</td></tr> + <tr> + <td>nssv16167444</td> + <td>Displays the region containing common copy number genomic variations from nstd186 (NCBI Curated Common Structural Variants)</td></tr> + <tr> + <td>COSM6161404</td> + <td>Displays the region containing Catalogue Of Somatic Mutations In Cancer (COSMIC)</td></tr> + <tr> + <td>nssv3395351</td> + <td>Displays the region containing ClinVar Copy Number Variants in the ClinVar database</td></tr> + <tr> + <td>BRCT_assoc</td> + <td>Displays the region containing manually-curated Pfam-A domains found in the GENCODE Genes</td></tr> + <tr> + <td>U133A:219211_at</td> + <td>Displays the region containing the consensus and exemplar sequences used for the selection of probes on the Affymetrix HG-U133A chips</td></tr> + <tr> <td>chr1 0 1000</td> <td>When entered without ":" and "-", uses 0-based, half-open coordinates (like custom tracks and internal table coordinates), so displays chr1:1-1000</td> </tr> <tr> <td>pseudogene mRNA</td> <td>Lists transcribed pseudogenes, but not cDNAs</td></tr> <tr> <td>p53</td> <td>Lists mRNAs related to the p53 tumor suppressor</td></tr> <tr> <td>T-cell receptor</td> <td>Lists mRNAs for T-cell receptor genes in GenBank</td></tr> <tr> <td>breast cancer</td> <td>Lists mRNAs associated with breast cancer</td></tr>