| hub gateway | description | ||
|---|---|---|---|
| primates | -NCBI primate genomes (28 assemblies) | +NCBI primate genomes (49 assemblies) | |
| mammals | -NCBI mammal genomes (115 assemblies) | +NCBI mammal genomes (267 assemblies) | |
| birds | -NCBI bird genomes (72 assemblies) | +NCBI bird genomes (112 assemblies) | |
| fishes | -NCBI fish genomes (86 assemblies) | +NCBI fish genomes (123 assemblies) | |
| vertebrate | -NCBI other vertebrate genomes (28 assemblies) | +NCBI other vertebrate genomes (46 assemblies) | |
| legacy | -NCBI genomes legacy/superseded by newer versions (16 assemblies) | +invertebrate | +NCBI invertebrate genomes (375 assemblies) | +
| fungi | +NCBI fungi genomes (405 assemblies) | ||
| plants | -NCBI plant genomes (105 assemblies) | +NCBI plant genomes (141 assemblies) | |
| VGP | -Vertebrate Genomes Project collection (188 assemblies) | +Vertebrate Genomes Project collection (233 assemblies) | |
| globalReference | Global Human Reference genomes, January 2020 (10 assemblies) | ||
| mouseStrains | 16 mouse strain assembly and track hub, May 2017 | ||
| gtexAnalysis | -Genotype-Tissue Expression (GTEx) Project analysis results track hub, V6 October 2015 | -||
| gtex | -Genotype-Tissue Expression (GTEx) RNA-seq signal track hub, V6 October 2015 | -||
| neuroDiffCrispr | -Structurally conserved primate cerebral cortex lincRNAs track hub, December 2018 | +legacy | +NCBI genomes legacy/superseded by newer versions (119 assemblies) |
-Please note: text file listing of 608 NCBI/VGP genome assembly hubs +Please note: text file listing of 1805 NCBI/VGP genome assembly hubs +
++Please note, the invertebrate category contains more than just invertebrate animals. Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the invertebrate grouping.
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