110e0750597f5a80bd93e9bea4312428d9f92182 hiram Wed Dec 29 13:00:08 2021 -0800 updated to use assembly hubs that do not have database assemblies on the RR no redmine diff --git src/hg/makeDb/doc/zoonomiaAsmHub/zoo241.asmId.sciName.tsv src/hg/makeDb/doc/zoonomiaAsmHub/zoo241.asmId.sciName.tsv index 653d406..c5c58be 100644 --- src/hg/makeDb/doc/zoonomiaAsmHub/zoo241.asmId.sciName.tsv +++ src/hg/makeDb/doc/zoonomiaAsmHub/zoo241.asmId.sciName.tsv @@ -4,116 +4,116 @@ GCA_002007465.1_ASM200746v1 Ailurus_fulgens GCA_004027895.1_AllBul_v1_BIUU Allactaga_bullata GCA_004027835.1_AloPal_v1_BIUU Alouatta_palliata_mexicana GCA_002201775.1_ALER1.0 Ammotragus_lervia GCA_004027475.1_AnoCau_v1_BIUU Anoura_caudifer GCA_004027515.1_AntAmePen_v1_BIUU Antilocapra_americana GCA_000952055.2_Anan_2.0 Aotus_nancymaae GCA_004027875.1_AplRuf_v1_BIUU Aplodontia_rufa GCA_004027435.1_ArtJam_v1_BIUU Artibeus_jamaicensis GCA_004024785.1_AteGeo_v1_BIUU Ateles_geoffroyi GCA_000493695.1_BalAcu1.0 Balaenoptera_acutorostrata GCA_000978805.1_ASM97880v1 Balaenoptera_bonaerensis GCA_004027495.1_BeaHun_v1_BIUU Beatragus_hunteri GCA_000754665.1_Bison_UMD1.0 Bison_bison GCA_000247795.2_Bos_indicus_1.0 Bos_indicus -bosMut1 Bos_mutus +GCF_000298355.1_BosGru_v2.0 Bos_mutus GCA_000003205.6_Btau_5.0.1 Bos_taurus GCA_000471725.1_UMD_CASPUR_WB_2.0 Bubalus_bubalis GCA_004027715.1_CalDon_v1_BIUU Callicebus_donacophilus GCA_002754865.1_ASM275486v1 Callithrix_jacchus GCA_000767855.1_Ca_bactrianus_MBC_1.0 Camelus_bactrianus GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 Camelus_dromedarius GCA_000311805.2_CB1 Camelus_ferus GCA_004027395.1_CanFam_VD_v1_BIUU Canis_lupus -GCA_000002285.2_CanFam3.1 Canis_lupus_familiaris +GCF_000002285.3_CanFam3.1 Canis_lupus_familiaris GCA_000978405.1_CapAeg_1.0 Capra_aegagrus GCA_001704415.1_ARS1 Capra_hircus GCA_004027915.1_CapPil_v1_BIUU Capromys_pilorides GCA_004027735.1_CarPer_v1_BIUU Carollia_perspicillata GCA_004027675.1_CasCan_v1_BIUU Castor_canadensis GCA_004024745.1_CatWag_v1_BIUU Catagonus_wagneri -cavApe1 Cavia_aperea +GCA_000688575.1_CavAp1.0 Cavia_aperea GCA_000151735.1_Cavpor3.0 Cavia_porcellus GCA_004027695.1_CavTsc_v1_BIUU Cavia_tschudii GCA_004027755.1_CebAlb_v1_BIUU Cebus_albifrons GCF_001604975.1_Cebus_imitator-1.0 Cebus_capucinus GCA_000283155.1_CerSimSim1.0 Ceratotherium_simum GCA_004027795.1_CerCot_v1_BIUU Ceratotherium_simum_cottoni GCF_000955945.1_Caty_1.0 Cercocebus_atys GCA_004027615.1_CertNeg_v1_BIUU Cercopithecus_neglectus GCA_004027955.1_ChaVel_v1_BIUU Chaetophractus_vellerosus GCA_004024725.1_CheMed_v1_BIUU Cheirogaleus_medius -chiLan1 Chinchilla_lanigera +GCF_000276665.1_ChiLan1.0 Chinchilla_lanigera GCA_000409795.2_Chlorocebus_sabeus_1.1 Chlorocebus_sabaeus GCA_004027855.1_ChoDid_v1_BIUU Choloepus_didactylus GCA_000164785.2_C_hoffmanni-2.0.1 Choloepus_hoffmanni GCA_004027935.1_ChrAsi_v1_BIUU Chrysochloris_asiatica GCF_000951035.1_Cang.pa_1.0 Colobus_angolensis GCF_000260355.1_ConCri1.0 Condylura_cristata GCA_004027555.1_CraTho_v1_BIUU Craseonycteris_thonglongyai GCA_004027575.1_CriGam_v1_BIUU Cricetomys_gambianus GCA_900186095.1_CHOK1S_HZDv1 Cricetulus_griseus GCA_004027635.1_CroInd_v1_BIUU Crocidura_indochinensis GCA_004023885.1_CryFer_v1_BIUU Cryptoprocta_ferox GCA_004027205.1_CteGun_v1_BIUU Ctenodactylus_gundi GCA_004027165.1_CteSoc_v1_BIUU Ctenomys_sociabilis GCA_004365215.1_CunPac_v1_BIUU Cuniculus_paca GCA_004363535.1_DasPun_v1_BIUU Dasyprocta_punctata GCA_000208655.2_Dasnov3.0 Dasypus_novemcinctus GCA_004027145.1_DauMad_v1_BIUU Daubentonia_madagascariensis GCA_002288925.2_ASM228892v2 Delphinapterus_leucas GCA_002940915.2_ASM294091v2 Desmodus_rotundus GCA_002844835.1_ASM284483v1 Dicerorhinus_sumatrensis GCA_004027315.1_DicBicMic_v1_BIUU Diceros_bicornis GCA_004027595.1_DinBra_v1_BIUU Dinomys_branickii GCF_000151885.1_Dord_2.0 Dipodomys_ordii GCA_004024685.1_DipSte_v1_BIUU Dipodomys_stephensi GCA_004027295.1_DolPat_v1_BIUU Dolichotis_patagonum GCA_000313985.1_EchTel2.0 Echinops_telfairi -eidHel1 Eidolon_helvum +GCA_000465285.1_ASM46528v1 Eidolon_helvum GCA_002443075.1_Milu1.0 Elaphurus_davidianus GCF_000299155.1_EleEdw1.0 Elephantulus_edwardii GCA_001685075.1_ASM168507v1 Ellobius_lutescens GCA_001685095.1_ETalpinus_0.1 Ellobius_talpinus GCA_002288905.2_ASM228890v2 Enhydra_lutris GCF_000308155.1_EptFus1.0 Eptesicus_fuscus GCA_001305755.1_ASM130575v1 Equus_asinus GCA_000002305.1_EquCab2.0 Equus_caballus GCA_000696695.1_Burgud Equus_przewalskii GCA_000296755.1_EriEur2.0 Erinaceus_europaeus GCA_004027335.1_EryPat_v1_BIUU Erythrocebus_patas GCA_004363415.1_EscRob_v1_BIUU Eschrichtius_robustus GCA_004363455.1_EubJap_v1_BIUU Eubalaena_japonica GCA_001262665.1_Eflavifronsk33QCA Eulemur_flavifrons GCA_004027275.1_EulFul_v1_BIUU Eulemur_fulvus felCat8 Felis_catus GCA_004023925.1_FelNig_v1_BIUU Felis_nigripes GCF_000743615.1_DMR_v1.0 Fukomys_damarensis GCA_004027255.1_GalVar_v1_BIUU Galeopterus_variegatus GCA_001651235.1_ASM165123v1 Giraffa_tippelskirchi GCA_004027185.1_GliGli_v1_BIUU Glis_glis GCA_900006655.3_Susie3 Gorilla_gorilla GCA_004027655.1_GraMur_v1_BIUU Graphiurus_murinus GCA_004023845.1_HelPar_v1_BIUU Helogale_parvula GCA_004026825.1_HemHyl_v1_BIUU Hemitragus_hylocrius GCA_000247695.1_HetGla_female_1.0 Heterocephalus_glaber GCA_004026845.1_HetBruBak_v1_BIUU Heterohyrax_brucei GCA_004027065.1_HipAmp_v1_BIUU Hippopotamus_amphibius GCA_001890085.1_ASM189008v1 Hipposideros_armiger GCA_004027415.1_HipGal_v1_BIUU Hipposideros_galeritus -GCA_000001405.27_GRCh38.p12 Homo_sapiens +hg38 Homo_sapiens GCA_004023945.1_HyaHya_v1_BIUU Hyaena_hyaena GCA_004027455.1_HydHyd_v1_BIUU Hydrochoerus_hydrochaeris GCA_004026905.1_HysCri_v1_BIUU Hystrix_cristata GCF_000236235.1_SpeTri2.0 Ictidomys_tridecemlineatus GCA_004363605.1_IndInd_v1_BIUU Indri_indri GCA_004363515.1_IniGeo_v1_BIUU Inia_geoffrensis GCA_000280705.1_JacJac1.0 Jaculus_jaculus GCA_004363705.1_KogBre_v1_BIUU Kogia_breviceps GCA_004026805.1_LasBor_v1_BIUU Lasiurus_borealis GCA_004024665.1_LemCat_v1_BIUU Lemur_catta GCA_000349705.1_LepWed1.0 Leptonychotes_weddellii GCA_004026855.1_LepAme_v1_BIUU Lepus_americanus GCA_000442215.1_Lipotes_vexillifer_v1 Lipotes_vexillifer GCA_000001905.1_Loxafr3.0 Loxodonta_africana GCA_001887905.1_LycPicSAfr1.0 Lycaon_pictus @@ -152,64 +152,64 @@ GCA_004027025.1_MyoCoy_v1_BIUU Myocastor_coypus GCF_000412655.1_ASM41265v1 Myotis_brandtii GCF_000327345.1_ASM32734v1 Myotis_davidii GCF_000147115.1_Myoluc2.0 Myotis_lucifugus GCA_004026985.1_MyoMyo_v1_BIUU Myotis_myotis GCA_004026745.1_MyrTri_v1_BIUU Myrmecophaga_tridactyla GCA_000622305.1_S.galili_v1.0 Nannospalax_galili GCA_004027105.1_NasLar_v1_BIUU Nasalis_larvatus GCA_002201575.1_ASM220157v1 Neomonachus_schauinslandi GCA_003031525.1_Neophocaena_asiaeorientalis_V1 Neophocaena_asiaeorientalis GCA_004026585.1_NocLep_v1_BIUU Noctilio_leporinus nomLeu3 Nomascus_leucogenys GCA_004027815.1_NycCou_v1_BIUU Nycticebus_coucang GCA_000292845.1_OchPri3.0 Ochotona_princeps GCA_000260255.1_OctDeg1.0 Octodon_degus -odoRosDiv1 Odobenus_rosmarus +GCF_000321225.1_Oros_1.0 Odobenus_rosmarus GCA_002102435.1_Ovir.te_1.0 Odocoileus_virginianus GCA_001660835.1_ASM166083v1 Okapia_johnstoni GCA_004026605.1_OndZib_v1_BIUU Ondatra_zibethicus GCA_004026725.1_OnyTor_v1_BIUU Onychomys_torridus GCF_000331955.2_Oorc_1.1 Orcinus_orca GCA_004365145.1_OryAfe_v1_BIUU Orycteropus_afer GCA_000003625.1_OryCun2.0 Oryctolagus_cuniculus GCF_000181295.1_OtoGar3 Otolemur_garnettii GCA_000298735.2_Oar_v4.0 Ovis_aries GCA_004026945.1_OviCan_v1_BIUU Ovis_canadensis_cremnobates GCA_000258655.2_panpan1.1 Pan_paniscus GCA_002880755.3_Clint_PTRv2 Pan_troglodytes GCA_004023805.1_PanOnc_v1_BIUU Panthera_onca GCA_001857705.1_PanPar1.0 Panthera_pardus GCA_000464555.1_PanTig1.0 Panthera_tigris GCA_000400835.1_PHO1.0 Pantholops_hodgsonii GCA_000264685.2_Panu_3.0 Papio_anubis GCA_004024585.1_ParHer_v1_BIUU Paradoxurus_hermaphroditus GCA_004363475.1_PerLonPac_v1_BIUU Perognathus_longimembris_pacificus GCF_000500345.1_Pman_1.0 Peromyscus_maniculatus GCA_004026965.1_PetTyp_v1_BIUU Petromus_typicus GCA_004363495.1_PhoPho_v1_BIUU Phocoena_phocoena GCA_002776525.1_ASM277652v1 Piliocolobus_tephrosceles GCA_004026625.1_PipPip_v1_BIUU Pipistrellus_pipistrellus GCA_004026645.1_PitPit_v1_BIUU Pithecia_pithecia GCA_004363435.1_PlaMin_v1_BIUU Platanista_gangetica_minor GCA_002880775.3_Susie_PABv2 Pongo_abelii GCA_004026925.1_ProCapCap_v1_BIUU Procavia_capensis GCA_000956105.1_Pcoq_1.0 Propithecus_coquereli GCA_002215935.1_ASM221593v1 Psammomys_obesus -ptePar1 Pteronotus_parnellii +GCA_000465405.1_ASM46540v1 Pteronotus_parnellii GCA_004024605.1_PteBra_v1_BIUU Pteronura_brasiliensis -pteAle1 Pteropus_alecto +GCF_000325575.1_ASM32557v1 Pteropus_alecto GCF_000151845.1_Pvam_2.0 Pteropus_vampyrus GCA_003327715.1_PumCon1.0 Puma_concolor GCA_004024825.1_PygNem_v1_BIUU Pygathrix_nemaeus GCA_004026565.1_RanTarSib_v1_BIUU Rangifer_tarandus GCF_000001895.5_Rnor_6.0 Rattus_norvegicus GCA_001888835.1_ASM188883v1 Rhinolophus_sinicus GCA_001698545.1_ASM169854v1 Rhinopithecus_bieti GCA_000769185.1_Rrox_v1 Rhinopithecus_roxellana GCA_004024865.1_RouAeg_v1_BIUU Rousettus_aegyptiacus GCA_004024885.1_SagImp_v1_BIUU Saguinus_imperator GCA_004024985.1_SaiTat_v1_BIUU Saiga_tatarica_tatarica saiBol1 Saimiri_boliviensis GCA_004024925.1_ScaAqu_v1_BIUU Scalopus_aquaticus GCA_004025065.1_SemEnt_v1_BIUU Semnopithecus_entellus GCA_004025045.1_SigHis_v1_BIUU Sigmodon_hispidus