143a56b0b44cf95b2168da9782b1517b3b6fd8db dschmelt Tue Dec 7 12:23:07 2021 -0800 Updating makeDocs for jaspar 2022 update refs #28322 diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt index 63617d0..cd08b38 100644 --- src/hg/makeDb/doc/hg19.txt +++ src/hg/makeDb/doc/hg19.txt @@ -34669,24 +34669,33 @@ cd jaspar ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2018.bb . ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2020.bb . cd ~/kent/src/hg/makeDb/trackDb vi human/jaspar.html curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/JASPAR2018_TFBS_help.html >> human/jaspar.html ############################################################################### # JASPAR 2022 track addition by Daniel 10/11/21 cd ~/kent/src/hg/makeDb/trackDb curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hg19/trackDb.txt | head -n16 >> human/jaspar.ra vi human/jaspar.ra cd /hive/data/genomes/hg19/bed/jaspar -wget http://expdatdbta.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg19.bb +wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg19.bb mv JASPAR2022_hg19.bb JASPAR2022.bb cd /gbdb/hg19/jaspar ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2022.bb . cd ~/kent/src/hg/makeDb/trackDb vi human/jaspar.html +############################################################################### + +# JASPAR 2022 bigBed update 12/7/21 +cd /hive/data/genomes/hg19/bed/jaspar +wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg19.bb +rm JASPAR2022.bb +mv JASPAR2022_hg19.bb JASPAR2022.bb +ls -lh +ls -lh /gbdb/hg19/jaspar