143a56b0b44cf95b2168da9782b1517b3b6fd8db dschmelt Tue Dec 7 12:23:07 2021 -0800 Updating makeDocs for jaspar 2022 update refs #28322 diff --git src/hg/makeDb/doc/hg38/jaspar.txt src/hg/makeDb/doc/hg38/jaspar.txt index 20b9db3..bbc5f6b 100644 --- src/hg/makeDb/doc/hg38/jaspar.txt +++ src/hg/makeDb/doc/hg38/jaspar.txt @@ -1,25 +1,36 @@ # JASPAR Track integration by Daniel 8/20/21 #trackDb copied in the hg19.txt makeDoc cd /hive/data/genomes/hg38/bed mkdir jaspar cd jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg38/JASPAR2018_hg38_all_chr.bb wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_hg38.bb mv JASPAR2020_hg38.bb JASPAR2020.bb mv JASPAR2018_hg38_all_chr.bb JASPAR2018.bb cd /gbdb/hg38 mkdir jaspar cd jaspar ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2018.bb . ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2020.bb . ############################################################################### # JASPAR 2022 track addition by Daniel 10/11/21 cd ~/kent/src/hg/makeDb/trackDb # trackDb copied in the hg19.txt makeDoc cd /hive/data/genomes/hg38/bed/jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb mv JASPAR2022_hg38.bb JASPAR2022.bb cd /gbdb/hg38/jaspar ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2022.bb . + +############################################################################### + +# JASPAR$ 2022 bigBed update 12/7/21 +cd /hive/data/genomes/hg38/bed/jaspar +wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb +rm JASPAR2022.bb +mv JASPAR2022_hg38.bb JASPAR2022.bb +ls -lh +ls -lh /gbdb/hg19/jaspar +