Commits for hiram

3450181d0d4ea0e081016d29b67dcbe3245c5d32 Mon Dec 6 14:40:45 2021 -0800

attempt to better adjust cluster batch size when many small contigs no redmine
- src/hg/utils/automation/doSimpleRepeat.pl - lines changed 18, context: html, text, full: html, text

cb9f070d5e860a9ebadd21e975d7f718b79aec8f Mon Dec 6 14:41:51 2021 -0800

adjusting the cluster for the simple repeats when many small contigs no redmine
- src/hg/utils/automation/doAssemblyHub.pl - lines changed 16, context: html, text, full: html, text

3b5ca881b4a3a665d84a60f38974090888f08931 Wed Dec 8 15:04:40 2021 -0800

avoid building blat indexes for genomes that are too large no redmine
- src/hg/utils/automation/doAssemblyHub.pl - lines changed 5, context: html, text, full: html, text

17e0d6daa3a364e32b1d565f49fd3e58ca036ede Fri Dec 10 14:20:35 2021 -0800

adding GCA_002250225.1_ASM225022v1 bakers yeast SK1 per user request refs #28533
- src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv - lines changed 2, context: html, text, full: html, text

1381d8c0721af93af42eec857abf953c353764c8 Fri Dec 10 14:23:35 2021 -0800

adding 3 birds for VGP and SK1 yeast per user request refs #38533
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 4, context: html, text, full: html, text

dc433b9840de8b514247024a9b57109fd68f635d Fri Dec 10 14:32:20 2021 -0800

adding 3 new birds from VGP project no redmine
- src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 3, context: html, text, full: html, text

d8c7e807044d5275314f191b9626387d7806f93b Fri Dec 10 16:27:29 2021 -0800

fixup chromAlias display for GenArk genome with small number of UCSC chrom names refs #28533
- src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text

58e45f0c6f05727b8cf72d21e83925e062297b30 Sat Dec 11 21:55:23 2021 -0800

avoid running tandemDups on assemblies with more than 100,000 contigs no redmine
- src/hg/utils/automation/doAssemblyHub.pl - lines changed 6, context: html, text, full: html, text