Commits for braney

v425_preview to v425_preview2 (2021-12-13 to 2021-12-20) v425

b87243c823ae619a0f382db4236df99216f3f1e8 Mon Dec 13 10:38:39 2021 -0800

• some knownGene cleanup
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV39.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM28.sh - lines changed 11, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildCgap.sh - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildCore.sh - lines changed 19, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildKnown.sh - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildTo.sh - lines changed 8, context: html, text, full: html, text

4cba91d2140fe4cc6bb2748d9009201fbcae577d Tue Dec 14 12:46:17 2021 -0800

• update hg19 kgXref, kgAlias, the search index files, and the hgTracks bigBed with newer gene symbols
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh - lines changed 35, context: html, text, full: html, text