File Changes for kent
switch to commits view, user indexv425_preview to v425_preview2 (2021-12-13 to 2021-12-20) v425
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- src/hg/hgTracks/barChartTrack.c
- lines changed 74, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- lines changed 3, context: html, text, full: html, text
f9d03e79d5565c0d9a28d57c0c67986a085a40c4 Tue Dec 14 21:09:37 2021 -0800
Fixing a three little bugs. Adding some #defines to avoid magic numbers. Fixing differences in sorting between expression values and labels.
- lines changed 22, context: html, text, full: html, text
dc8c6d138d71dfc4c0be0224de14c2106b9ae61e Wed Dec 15 09:21:32 2021 -0800
Making it handle zoomed out views with many bars in the chart better. Stop making map-boxes for mouse-overs when they are a pixel or less, which sped up the page a lot. Also expanded sub-pixel scaling with more cases.
- lines changed 22, context: html, text, full: html, text
3c50590d0e6574120daeec33c5b5b4e90ba782da Fri Dec 17 16:52:06 2021 -0800
Making scaling work better on graphs with a larger number of bars. Improving mouse-over messages.
- src/hg/hgc/barChartClick.c
- lines changed 4, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- src/hg/inc/barChartUi.h
- lines changed 13, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- src/hg/inc/facetedTable.h
- lines changed 27, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- lines changed 2, context: html, text, full: html, text
f9d03e79d5565c0d9a28d57c0c67986a085a40c4 Tue Dec 14 21:09:37 2021 -0800
Fixing a three little bugs. Adding some #defines to avoid magic numbers. Fixing differences in sorting between expression values and labels.
- src/hg/lib/barChartUi.c
- lines changed 31, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- src/hg/lib/facetField.c
- lines changed 1, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- src/hg/lib/facetedTable.c
- lines changed 202, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- lines changed 1, context: html, text, full: html, text
44e41d5c98ea28f0e52d04527cafda9a2024d7a0 Mon Dec 13 18:28:48 2021 -0800
Changing separater in generated key from space to /
- lines changed 76, context: html, text, full: html, text
f9d03e79d5565c0d9a28d57c0c67986a085a40c4 Tue Dec 14 21:09:37 2021 -0800
Fixing a three little bugs. Adding some #defines to avoid magic numbers. Fixing differences in sorting between expression values and labels.
- lines changed 11, context: html, text, full: html, text
23b9c239a6c92dc82a54294f9c99aa4b47292b79 Wed Dec 15 08:29:05 2021 -0800
Making merged bars respect individual field selection too on genome browser.
- src/hg/lib/tablesTables.c
- lines changed 23, context: html, text, full: html, text
a9b3f2ba629176ff781c64587544b78ddfa1557b Mon Dec 13 18:30:59 2021 -0800
Making merge/unmerge buttons jump page on return to where they are rather than to top of page. Saves scrolling when merging/unmerging a lot of things.
- src/hg/makeDb/trackDb/human/hg38/brainDevRegions.ra
- lines changed 42, context: html, text, full: html, text
db997308685e20958b6698106949c9681c1b607c Fri Dec 17 14:24:20 2021 -0800
Adding brainDevRegions track.
- lines changed 1, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/hg/makeDb/trackDb/human/hg38/tabulaSapiens.ra
- lines changed 2, context: html, text, full: html, text
356667cb107c2bcf74f8031268a9ef426a94806b Mon Dec 13 14:56:25 2021 -0800
Getting rid of some old huge commented out bar and color lists
- lines changed 1, context: html, text, full: html, text
2f068905be07e4d87c8e6e6624989397c3177730 Mon Dec 13 18:28:00 2021 -0800
Setting maxWindowToDraw's of one million for the detailed single cell tracks.
- lines changed 1, context: html, text, full: html, text
70da2a9339eeaf6a9441b198ce4fcb2ab198622f Wed Dec 15 08:20:49 2021 -0800
Bumping max window on full details barcharts from 1M to 2M.
- lines changed 1, context: html, text, full: html, text
c005deeec758b8922d72dbe1985e4f4d065cf3bb Wed Dec 15 09:19:08 2021 -0800
Bumping up max window size since barchart drawer/mapbox maker can handle it now.
- lines changed 35, context: html, text, full: html, text
0fce19e6095612f58c15f77fa50400876c963365 Fri Dec 17 16:53:21 2021 -0800
Improving short and long labels. Removing some unneeded subtracks.
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra
- lines changed 1, context: html, text, full: html, text
db997308685e20958b6698106949c9681c1b607c Fri Dec 17 14:24:20 2021 -0800
Adding brainDevRegions track.
- src/hg/makeDb/trackDb/mouse/mm10/tabulaMurisSenis.ra
- lines changed 2, context: html, text, full: html, text
2f068905be07e4d87c8e6e6624989397c3177730 Mon Dec 13 18:28:00 2021 -0800
Setting maxWindowToDraw's of one million for the detailed single cell tracks.
- lines changed 2, context: html, text, full: html, text
70da2a9339eeaf6a9441b198ce4fcb2ab198622f Wed Dec 15 08:20:49 2021 -0800
Bumping max window on full details barcharts from 1M to 2M.
- lines changed 2, context: html, text, full: html, text
c005deeec758b8922d72dbe1985e4f4d065cf3bb Wed Dec 15 09:19:08 2021 -0800
Bumping up max window size since barchart drawer/mapbox maker can handle it now.
- lines changed 116, context: html, text, full: html, text
c4640a1f9cd94203c06b75c17485d34f57f8333d Fri Dec 17 16:54:43 2021 -0800
Removing all but usual and full tracks. Merging 10x and FACS into same supertrack. Improving short and some long labels.
- src/inc/common.h
- lines changed 5, context: html, text, full: html, text
7a9ec1f838c6a2546278075ffe575fc950ef0b45 Tue Dec 14 20:58:27 2021 -0800
Addng slName sorting function that ignores case and sorts numbers.
- lines changed 12, context: html, text, full: html, text
eb09b58ec1c838bc315f37322872369200ffe7b9 Sun Dec 19 08:37:56 2021 -0800
Added uglyt function, like uglyTime, but without the html formatting, so can use it in command line utilities.
- src/inc/fieldedTable.h
- lines changed 3, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- src/inc/vMatrix.h
- lines changed 3, context: html, text, full: html, text
a8c1fc078328e6589cce6dda9090b85e66e77332 Sun Dec 19 08:47:46 2021 -0800
Making tsvMatrix a private structure.
- src/lib/common.c
- lines changed 9, context: html, text, full: html, text
7a9ec1f838c6a2546278075ffe575fc950ef0b45 Tue Dec 14 20:58:27 2021 -0800
Addng slName sorting function that ignores case and sorts numbers.
- lines changed 18, context: html, text, full: html, text
eb09b58ec1c838bc315f37322872369200ffe7b9 Sun Dec 19 08:37:56 2021 -0800
Added uglyt function, like uglyTime, but without the html formatting, so can use it in command line utilities.
- src/lib/fieldedTable.c
- lines changed 10, context: html, text, full: html, text
d3f9b9ecf2a6d30bd8f97566f72e5650982c308d Mon Dec 13 15:22:03 2021 -0800
Adding hgTracks display of merged bar charts.
- src/lib/strex.c
- lines changed 26, context: html, text, full: html, text
14f04b894268dfdf9a94c8123df088e54683fa2c Fri Dec 17 16:48:33 2021 -0800
Fixing tidy() function in strex.
- src/lib/vMatrix.c
- lines changed 264, context: html, text, full: html, text
a8c1fc078328e6589cce6dda9090b85e66e77332 Sun Dec 19 08:47:46 2021 -0800
Making tsvMatrix a private structure.
- src/tabFile/tabToTabDir/tests/expected/a_strex_test.tsv
- lines changed 1, context: html, text, full: html, text
14f04b894268dfdf9a94c8123df088e54683fa2c Fri Dec 17 16:48:33 2021 -0800
Fixing tidy() function in strex.
- src/utils/makefile
- lines changed 2, context: html, text, full: html, text
6811d1e191fbec5ad2685c6232e86f287609acb1 Sun Dec 19 08:51:08 2021 -0800
Adding matrixClusterColumns and matrixNormalize to the make chain.
- src/utils/matrixClusterColumns/matrixClusterColumns.c
- lines changed 1, context: html, text, full: html, text
78488aa1acc150f98398d66f8bbf87e93ec889ee Tue Dec 14 21:00:13 2021 -0800
Making this sort the same nice way the browser faceted tables do.
- lines changed 27, context: html, text, full: html, text
2671b4753566a83d798087c6432159336ba90a40 Sat Dec 18 11:04:43 2021 -0800
Microoptimization in writing out zeros sped it up 10%. Refactoring a code snippet into a function for possible reuse.
- src/utils/matrixNormalize/matrixNormalize.c
- lines changed 6, context: html, text, full: html, text
68882077fc47d554bfb5284949c52cc871ca8903 Sat Dec 18 09:50:50 2021 -0800
Added special case for zero during printing out of matrix cause it's so common and fprintf(f, %g, 0.0) is rather slower than fputs(0, f);
- lines changed 71, context: html, text, full: html, text
cc7c832d77253b88358ece4b128ceafd6bf8d5c4 Sat Dec 18 11:58:42 2021 -0800
Multithreading to speed things up a bit in column mode.
- lines changed 6, context: html, text, full: html, text
06a9b44cb029413d7d7b27367230bf5b5b0dd006 Sat Dec 18 12:03:00 2021 -0800
Put in the usual optimization to print zero faster for a 5% speedup.
- lines changed 52, context: html, text, full: html, text
ebfdcc9a044d15c0bd9c4355b2c92ff3d6f95024 Sun Dec 19 08:50:12 2021 -0800
Parallelizing memMatrixToTsv and moving it to a library. Parallelizing column normalizing.
- src/utils/matrixNormalize/tests/colLength.out
- lines changed 5, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/utils/matrixNormalize/tests/colSum.out
- lines changed 5, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/utils/matrixNormalize/tests/expected/colLength.out
- lines changed 5, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/utils/matrixNormalize/tests/expected/colSum.out
- lines changed 5, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/utils/matrixNormalize/tests/expected/rowLength.out
- lines changed 4, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/utils/matrixNormalize/tests/expected/rowSum.out
- lines changed 4, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/utils/matrixNormalize/tests/makefile
- lines changed 11, context: html, text, full: html, text
30c104443327d6c2c7beaf0e9d508bf2f123f15c Sun Dec 19 08:52:58 2021 -0800
Adding basic tests to test chain.
- src/utils/matrixNormalize/tests/rowLength.out
- lines changed 4, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
- src/utils/matrixNormalize/tests/rowSum.out
- lines changed 4, context: html, text, full: html, text
ff980ca1294206936242b945c9835c066ffc3e8c Sun Dec 19 08:36:37 2021 -0800
Changed a facet name from detailed_cell_type to cell_cluster
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