312002c4b4015a4e5acedd47dad9e5d6b8d3c1b1
markd
  Mon Nov 22 18:38:59 2021 -0800
move rmskAlign and rmskJoined to lib so it they can be used by programs

diff --git src/hg/cgilib/makefile src/hg/cgilib/makefile
index 066d711..8d4fdbd 100644
--- src/hg/cgilib/makefile
+++ src/hg/cgilib/makefile
@@ -12,31 +12,31 @@
   cnpIafrate2.o cnpLocke.o cnpSebat.o cnpSebat2.o cnpSharp.o cnpSharp2.o codeBlast.o cogs.o contigAcc.o \
   cpgIslandExt.o ctgPos2.o cutter.o dbRIP.o dbSnpDetails.o dbSnpRs.o delConrad2.o delHinds2.o dgv.o \
   dgvPlus.o dless.o dnaProbe.o dv.o dvBed.o dvXref2.o ensFace.o ensInfo.o ensPhusionBlast.o est3.o \
   factorSource.o fbTables.o fileUi.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o \
   gbMiscDiff.o gbProtAnn.o gbWarn.o genMapDb.o gencodeAnnotationRemark.o gencodeExonSupport.o \
   gencodeGeneSource.o gencodeIntron.o gencodeTag.o gencodeToEntrezGene.o gencodeToPdb.o gencodeToPubMed.o \
   gencodeToUniProt.o gencodeTranscriptSource.o gencodeTranscriptSupport.o gencodeTranscriptionSupportLevel.o \
   geneSimilarities.o genoLay.o genomicDups.o genomicSuperDups.o growthCondition.o gtexBoxplot.o \
   gtexEqtlCluster.o gv.o gvUi.o gwasCatalog.o hAnno.o hCytoBand.o haplotypes.o hapmapAllelesSummary.o \
   hashJoin.o hgBam.o hgExp.o hgSeq.o hgdpGeo.o humanParalog.o hvGfx.o isochores.o itemConf.o \
   itemDetailsHtml.o jaxOrtholog.o jaxQTL.o jaxQTL3.o joinMixer.o kg1ToKg2.o ld.o ld2.o lsSnpPdbChimera.o \
   mammalPsg.o mapSts.o mathWig.o mcnBreakpoints.o mouseOrtho.o mouseSyn.o mouseSynWhd.o ncRna.o \
   ncbiRefSeqLink.o nonCodingUi.o omicia.o omimTitle.o oreganno.o oregannoUi.o pal.o pcrResult.o \
   peptideAtlasPeptide.o pgPolyphenPred.o pgSiftPred.o polyGenotype.o protVar.o protobuf.o pscreen.o \
   pseudoGeneLink.o pslWScore.o putaInfo.o recombRate.o recombRateMouse.o recombRateRat.o rhMapZfishInfo.o \
-  rmskAlign.o rmskJoined.o rnaFold.o rnaHybridization.o rnaPLFold.o rnaSecStr.o roughAli.o sageExp.o \
+  rnaFold.o rnaHybridization.o rnaPLFold.o rnaSecStr.o roughAli.o sageExp.o \
   search.o sessionThumbnail.o sgdClone.o sgdDescription.o simpleNucDiff.o simpleRepeat.o snp125.o \
   snp125CodingCoordless.o snp125Ui.o snp132Ext.o snpMap.o snpUi.o softPromoter.o softberryHom.o stsInfo.o \
   stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o suggest.o \
   switchDbTss.o synteny100000.o tRNAs.o targetDb.o tfbsConsFactors.o tfbsConsMap.o tfbsConsSites.o \
   trackLayout.o trackTable.o transMapGene.o transMapInfo.o transMapSrc.o transMapStuff.o transRegCode.o \
   transRegCodeProbe.o ucscRetroInfo.o ucscRetroOrtho.o userRegions.o variant.o variome.o vegaInfoZfish.o \
   visiGene.o vntr.o wabAli.o wgRna.o wikiTrack.o yaleGencodeAssoc.o zdobnovSynt.o
 
 ifeq (${GBROWSE}, 1)
   GBROWSE_D=-DGBROWSE
 else
   GBROWSE_D=
 endif
 
 %.o: %.c