f44d5b894cf549947ac06bf2203670b6c56b3c31 max Fri Dec 17 09:21:39 2021 -0800 adding exome probesets, refs #28655 diff --git src/hg/makeDb/doc/hg38/exomeProbesets.txt src/hg/makeDb/doc/hg38/exomeProbesets.txt index f6f501e..c97f866 100644 --- src/hg/makeDb/doc/hg38/exomeProbesets.txt +++ src/hg/makeDb/doc/hg38/exomeProbesets.txt @@ -22,30 +22,33 @@ # Twist Biosciences Datasets: Track: Twist - RefSeq Exome Panel Target Regions Download: https://www.twistbioscience.com/sites/default/files/resources/2019-09/Twist_Exome_RefSeq_targets_hg38.bed File name: Twist_Exome_RefSeq_targets_hg38.bed Track: Twist - Core Exome Panel Target Regions Download: https://www.twistbioscience.com/sites/default/files/resources/2019-06/Twist_Exome_Target_hg38.bed File name: Twist_Exome_Target_hg38.bed Track: Twist - Comprehensive Exome Panel Target Regions Download: https://www.twistbioscience.com/sites/default/files/resources/2020-09/Twist_ComprehensiveExome_targets_hg38.bed File name: Twist_ComprehensiveExome_targets_hg38.bed +Track: Twist - Exome 2.1 +Download: curl https://www.twistbioscience.com/sites/default/files/resources/2021-10/hg19_Twist_exome_2_1_annotated_targets.bed | cut -f1-3 > TwistExome21.bed +bedToBigBed TwistExome21.bed ../../chrom.sizes TwistExome21.bb -type=bed3 # Agilent Datasets: Download for all Agilent files: https://earray.chem.agilent.com/suredesign/ - Password needed (from Ana) Track: Agilent - SureSelect Clinical Research Exome V2 Covered by Probes File name: S30409818_Covered.bed Track: Agilent - SureSelect Clinical Research Exome V2 Target Regions File name: S30409818_Regions.bed Track: Agilent - SureSelect Focused Exome Covered by Probes File name: S07084713_Covered.bed Track: Agilent - SureSelect Focused Exome Target Regions File name: S07084713_Regions.bed