0564395ec363631f2ff8d295da6f6b50f873fda4 braney Mon Jan 24 17:01:53 2022 -0800 more chromAlias work: some name changes and support for the new genark chromAlias format diff --git src/hg/inc/trackHub.h src/hg/inc/trackHub.h index cfe79ae..2d64fe0 100644 --- src/hg/inc/trackHub.h +++ src/hg/inc/trackHub.h @@ -134,33 +134,30 @@ /* Return number of chromosomes in a assembly data hub. */ struct slName *trackHubAllChromNames(char *database); /* Return a list of all the chrom names in this assembly hub database. */ char *trackHubChromSizes(char *database); /* see if this assembly hub has a chrom.sizes file, return url if present * returns NULL when not present */ char *trackHubAliasFile(char *database); /* see if this assembly hub has an alias file, return url if present * returns NULL when not present */ -struct hash *trackHubAllChromAlias(char *database); -/* Return a hash of chroms with alias names from alias file if present */ - struct chromInfo *trackHubAllChromInfo(char *database); /* Return a chromInfo structure for all the chroms in this database. */ struct chromInfo *trackHubMaybeChromInfo(char *database, char *chrom); /* Return a chromInfo structure for just this chrom in this database. * Return NULL if chrom doesn't exist. */ struct chromInfo *trackHubChromInfo(char *database, char *chrom); /* Return a chromInfo structure for just this chrom in this database. * errAbort if chrom doesn't exist. */ char *trackHubGenomeNameToDb(char *genome); /* Return assembly name given a genome name if one exists, otherwise NULL. */ struct dbDb *trackHubGetDbDbs(char *clade);