5f032f4769aca06fedde822c0ccff089321369a4 braney Thu Jan 27 15:46:04 2022 -0800 stop passing in NULL for database in getChromAlias() diff --git src/hg/inc/chainNetDbLoad.h src/hg/inc/chainNetDbLoad.h index 0da3233..a34f134 100644 --- src/hg/inc/chainNetDbLoad.h +++ src/hg/inc/chainNetDbLoad.h @@ -1,59 +1,59 @@ /* chainNetDbLoad - This will load a database representation of * a net into a chainNet representation. Also helps database * representation of chain into chain. */ /* Copyright (C) 2002 The Regents of the University of California * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef CHAINNETDBLOAD_H #define CHAINNETDBLOAD_H #ifndef JKSQL_H #include "jksql.h" #endif #ifndef NETALIGN_H #include "netAlign.h" #endif #ifndef CHAINNET_H #include "chainNet.h" #endif struct cnFill *cnFillFromNetAlign(struct netAlign *na, struct hash *nameHash); /* Convert netAlign to cnFill. Name hash is a place to store * the strings. */ struct chainNet *chainNetLoadResult(struct sqlResult *sr, int rowOffset); /* Given a query result that returns a bunch netAligns, make up * a list of chainNets that has the equivalent information. * Note the net->size field is not filled in. */ struct chainNet *chainNetLoadRange(char *database, char *track, char *chrom, int start, int end, char *extraWhere); /* Load parts of a net track that intersect range. */ struct chainNet *chainNetLoadChrom(char *database, char *track, char *chrom, char *extraWhere); /* Load net on whole chromosome. */ -struct chain *chainLoadIdRangeHub(char *database, char *track, char *chrom, +struct chain *chainLoadIdRangeHub(char *database, char *fileName, char *track, char *chrom, int start, int end, int id); /* Load parts of chain of given ID from bigChain file. Note the chain header * including score, tStart, tEnd, will still reflect the whole chain, * not just the part in range. However only the blocks of the chain * overlapping the range will be loaded. */ struct chain *chainLoadIdRange(char *database, char *track, char *chrom, int start, int end, int id); /* Load parts of chain of given ID from database. Note the chain header * including score, tStart, tEnd, will still reflect the whole chain, * not just the part in range. However only the blocks of the chain * overlapping the range will be loaded. */ struct chain *chainLoadId(char *database, char *track, char *chrom, int id); /* Load chain of given ID from database. */ #endif /* CHAINNETDBLOAD_H */